Alcanivorax sp. ALC70: ASALC70_02950
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Entry
ASALC70_02950 CDS
T09695
Symbol
rnr_1
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
alca
Alcanivorax sp. ALC70
Pathway
alca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASALC70_02950 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alca03019
]
ASALC70_02950 (rnr_1)
03016 Transfer RNA biogenesis [BR:
alca03016
]
ASALC70_02950 (rnr_1)
Enzymes [BR:
alca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ASALC70_02950 (rnr_1)
Messenger RNA biogenesis [BR:
alca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASALC70_02950 (rnr_1)
Transfer RNA biogenesis [BR:
alca03016
]
Prokaryotic type
tRNA degradation factors
ASALC70_02950 (rnr_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
UWN50727
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Position
2753915..2755825
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AA seq
636 aa
AA seq
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MSRKRYKDPHADREAEKYENPVPSRELILKVLDDQGKPLGKHQLADILEVGEDGEVGLER
RLKAMLRDGQLVENRNGKVGIASRMDLIAGRVQAHRDGFGFLIADEPGRKDLFLAPRQMQ
KVMDGDRVLVSVAGFNRFGKEEARIVEIAERAVTEIVGRYRQEAGVAFIDPENRRITKEV
LVEDHNGIKPGAGDHVRAEITQYPSRDHNVLVRLEEIIATPEQPGMEVDVALRRFEIPHQ
WPDGVERDAERFGAEVPHPAKAHRVDLRDLPLVTIDGEDARDFDDAVYVERRKRGGWRLI
VAIADVSHYVHPNSPLDNEAHKRGNSVYFPNRVVPMLPEALSNGLCSLNPHVDRLCLYCD
MLVSANGRVSRFVFREGVMRSRHRLTYTKVGAVIEEPESALAVKTVESLDDESLDSIWAF
HEMYTALRRRRELRGAIDFESDESRILYDEHQKIRDIVPVHRNVAHVMIEEAMLAANICA
ARLLEKAGVPTLFRNHEPPKEERLANLQQFLGGLGLSLAWSEGSITPRVFQELGEAIDER
PDRQVIQTMMLRTMTQAKYEAEVKGHFGLAYNAYTHFTSPIRRYPDLLVHRAIRYLIRGG
AETPHADNPGELPAIPATTSCRTARATWSPWASTAR
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaaacgctacaaggatccccacgcggaccgggaagcggagaaatacgagaat
ccggtgcccagccgcgagttgatccttaaggtcctcgacgaccagggaaagccgctcggc
aagcatcagctcgccgacatcctggaggtgggtgaagacggagaggtgggcctggagcgc
cgcctcaaggcgatgctgcgcgacggccagctggtggagaaccgcaacggcaaggtgggc
attgcctcgcgcatggacctgatcgccggccgcgtgcaggctcaccgggatggtttcggc
ttcctgatcgccgacgagcccggccgcaaggacctgttcctggcgccgcgccagatgcag
aaggtgatggacggcgaccgggtgctggtcagcgtggccggcttcaaccggttcggcaag
gaagaggcgcgcatcgtcgagatcgccgagcgggcggtcaccgaaatcgtcggccgttac
cgccaggaagccggcgtcgccttcattgatcccgagaaccgccgcatcaccaaggaagtg
ctggtcgaggaccacaacggcatcaagccgggcgccggcgaccatgtgcgcgccgagatc
acccagtacccgtcccgggaccacaacgtcctggtgcgcctggaggagatcatcgccacc
ccggaacagccgggcatggaagtggacgtggccctgcgccgcttcgagatcccccaccag
tggccggatggcgtggagcgggacgccgagcgcttcggcgccgaggtgccgcacccggcc
aaggcccatcgggtggacctgcgcgatctgccgctggtgaccatcgatggcgaggacgcc
cgcgatttcgacgacgcggtctacgtggagcgccgcaagcgcggcggctggcggctgatc
gtggcgatcgccgacgtcagccactatgtgcaccccaacagcccgctggacaacgaagcc
cacaaacgcggtaactccgtgtacttccccaaccgggtggtgcccatgctgccggaggcc
ctgtccaacggcctgtgctcgttgaacccccacgtggaccggctgtgcctgtactgcgac
atgctggtgtccgccaacggccgggtgtcgcgcttcgtgttccgcgagggcgtgatgcgt
tcccgccaccgtttgacctacaccaaggtgggcgcggtcatcgaggagccggaatcggcg
ctggcggtgaagaccgtggagagcctggacgacgaatccctggattccatctgggccttc
cacgagatgtacaccgccctgcgtcgccgccgtgagctgcgcggcgccatcgacttcgag
agcgacgaaagccgcatcctctacgacgagcatcagaagatccgcgatatcgtgccggtg
caccgcaacgtggcccacgtgatgatcgaggaggccatgctggcggccaatatctgcgcc
gcccgcctgctggaaaaggccggcgtgccgaccctgttccgcaatcacgagccgcccaag
gaagaacgcctggcgaacctgcagcagttcctcggcggcctggggctgagcctggcctgg
tcggagggttccatcacgccgcgggtgttccaggagctgggcgaggccatcgacgagcgt
ccggatcgccaggtgatccagaccatgatgctgcgcaccatgacccaggcgaagtatgag
gcggaagtgaagggtcacttcggcctggcctacaacgcctacactcatttcacctcgccg
atccgccgctacccggacctgctggtgcaccgcgccatccgctatctgatccgtggcggc
gccgagacgccccacgcggacaaccccggtgaactgccggcgatccccgcgaccacatcc
tgccgtacagccagagcgacatggtcgccatgggcgagcactgctcgatga
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