Alcaligenes sp. NLF5-7: MID00_01400
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Entry
MID00_01400 CDS
T10407
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
alcn Alcaligenes sp. NLF5-7
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alcn03019
]
MID00_01400 (hrpA)
Enzymes [BR:
alcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MID00_01400 (hrpA)
Messenger RNA biogenesis [BR:
alcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MID00_01400 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
AAA_23
ABC_tran
SRP54
AAA_30
PhoH
ResIII
AAA_25
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UTM02105
LinkDB
All DBs
Position
complement(286120..289911)
Genome browser
AA seq
1263 aa
AA seq
DB search
MHESDELTENPHSLPTISYPDDLPVSARRAEIAQAIKDHQVVIVCGETGSGKTTQLPKIC
LELGRGLQGKIIGHTQPRRLAATSVAKRIAQELQSEIGDWVGYQIRFNDKTGPRSAIKLM
TDGILLAESQRDPLLSRYDTIIIDEAHERSLNIDFLLGFLKQLLPRRPDLKLIITSATID
AERFAQHFAHKGRKAPVIEVSGRLYPVDIVYRPILDPSLVDAEERRSASEEERDLMQGIV
DAVQECARHGTGDILVFLPGEREIREATEALEKEKPINTVILPLFARLSQADQERIFRPK
GNARRVVLATNVAETSLTVPGIRFVVDSGLARIKRYSWRNKVEQLRIEAISQASASQRAG
RCGRIGPGICIRLYDEQDFKSRPPFTDPEILRSSLASVILRMKALHLDDVETFPFVEPPT
GRAIADGYQILQELGALDEQQRLTKVGRSLAKLPVDPRVARMILAGHEHHCLTEMLIVAS
AMSVQDPRDRPVHEREAANQAHARFNDDKSEFLSYVKLWNWLEELSQEQSSQRKFANSVK
QALLSPLRIREWRDVHTQLRSLVQEQRWVANPSAATYEQVHLALLTGLIGNIGYKSEETG
VYQGTRELRFVIHPGSKLVKKAGRWILAGELMETTRLFARCVARIEPQWIEKVGAHLLRK
TWGDPRWEKKAGQVVANERATLYGLLIYSGRRIHFGRIDPVQARELFLRQALVPGEIDSN
LPFLRHNRQQIQAVERLEHQSRRPDILVDEELIYAFYDQRIPKDVYQTATLEKWFKGLSK
EEAKGLELNRDELMQHDAAGITTEVFPRSVEWQGVKMALDYHFEPGSVRDGVTLSVPLFA
LNQIDAARCEWLVPGMLKEKVLALLKSLPQRIRRHCVPLPDYAAAFHQRWFEKAADPGMS
LLDAISQDMWTQLKQRPQRSDFKPETLATHLFMNFRVIDEHGRMLSGGRNLDQLKAEHGR
QAQASFQQMAASDEQVAQVLDHEQLTSWSFGELPELMEIKRKGRSFIGYPALIDKKTHCD
LDVFDDPAQAQRQHRQGLRRLFRLALREQVRFLEKNITDLTRISMLYINLGTQEQLRDQI
IDVALEQSCMMEPWPKNQAEFEARVQEGRSRLGLVAQEVARLAGQILTEWSAAQKKLAQI
KAHPEALKDIQQQLNALMPTLFLESNEYAQLAHMPRYLKAVQTRVDKLRADPARDQRLMQ
DMSVLLTKYQRAVAALKGATDSGLRDFRWMLEELRVSLFAQELRTPMPVSVKRLEKAWAA
LQR
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagtccgacgaattgactgaaaacccacactctttaccaacaatttcgtaccct
gatgacctgccagtcagcgcccgacgggccgaaattgcgcaggcgatcaaagaccatcag
gtggtcattgtgtgtggtgaaaccggttcgggcaaaaccacccaattacccaaaatctgt
ctggagctgggccgtggcctgcagggcaagattattggtcatacccagccgcgccgtctg
gccgccacgtcggtcgccaagcgtattgcccaggagctgcaatcggagattggtgactgg
gtagggtaccaaatccgctttaacgacaagaccggaccgcgctcggccatcaaattgatg
acagacgggatcttgctggccgagtcccagcgcgatcccctgttaagccgctatgacacg
atcattattgacgaggcccatgaacgcagtctgaacatcgactttctgctgggtttttta
aagcaactgttgccacggcgtccggacctgaagctgatcattacctcggccacaattgat
gccgagcgtttcgcgcagcactttgcccacaagggcaggaaggcgcctgtcattgaagtg
tcgggccgtctgtatcccgtcgatattgtgtaccgcccgattctggacccgtctttggtc
gatgccgaagaacgccgttccgcctccgaggaggagcgggatctgatgcaaggcattgtg
gatgcggtgcaggaatgtgcccggcatggtacgggcgacattctggtcttcctgcctggt
gagcgtgaaatccgcgaagccaccgaggcgctggaaaaagaaaagcccatcaataccgtg
atcctgcccttgtttgcgcgtctgtcgcaggcggatcaggaacgtattttccgacccaaa
ggcaatgcgcgccgtgtggtgctggcgaccaatgtggcagaaacctcgctgaccgtgccc
ggcattcgctttgtggtcgatagtggtctggcgcgtatcaagcgctattcctggcgcaac
aaggtcgagcaactgcgtattgaagcgatcagtcaggcctcggccagccagcgggcaggg
cgttgcggtcgtattggccccggtatctgtattcgtctgtatgacgagcaggatttcaag
agccgccccccctttacggatcccgagattttgcgctcctcgctggcctcggtgattctg
cgcatgaaggccttgcatctggacgatgtggaaaccttcccctttgtggagccgcccact
ggccgtgcgattgccgatgggtatcaaattctgcaagagctgggtgcgctggatgaacag
cagcgcctgaccaaggtaggccgttccctggccaaactgcctgtggacccgcgtgtggcc
cgcatgattctggccggtcatgaacatcattgtttgacggaaatgctgatcgtggcctcg
gccatgtccgtgcaagatccgcgtgatcgtcctgtccatgagcgtgaagcggccaatcag
gcccatgcccgtttcaacgacgacaagtccgagttcctgtcctatgtgaagctgtggaac
tggttggaagagctgtcgcaggaacaaagctcgcagcgcaagtttgccaatagcgttaaa
caggctttgctgtcccctttgcgtattcgtgaatggcgagatgttcatacccaattacgc
agtctggtacaggagcagcgctgggtcgccaacccctcggcagccacgtatgagcaggtg
catctggccttgttgacgggcttgatcggcaatattggctacaagagtgaagaaacgggt
gtctaccaaggcacgcgtgaattgcgctttgtgattcaccccggctccaagctggtcaag
aaagcaggccgttggatacttgcgggcgagctgatggaaactacgcggctctttgcccgc
tgtgtggcgcgtatcgagccgcagtggattgaaaaagtcggtgcccatttgctgcgcaaa
acctggggcgatccgcgctgggagaagaaagccgggcaggtagtggccaatgagcgcgct
accttgtatggcttgctgatttacagtggccgtcgcattcactttggccgcattgatccg
gtgcaggcacgcgagttgttcttgcgccaggctctggtgccaggcgagatcgactccaac
ctgcctttcctgcgtcataaccgtcagcagatacaggcggtagagcgtttggagcaccaa
tcccgccgccccgatattctggtggacgaagaactgatttacgcgttttacgatcagcgc
attcccaaggacgtgtaccagaccgccacattggaaaagtggttcaagggcttgtccaaa
gaagaggccaagggcctggagctgaaccgcgacgaattgatgcagcacgacgcagccggc
atcaccaccgaggtctttccgcgctccgttgaatggcagggcgtgaagatggcgctggat
tatcacttcgagccgggctcggtgcgcgatggggtgaccttgagcgttcccttgttcgcc
ttgaaccagatcgacgctgcgcgttgcgagtggctggtgcccggcatgctgaaagaaaaa
gtgctggctttgctgaaatccttgccgcaacgcatccgccgccattgtgtgccgctgccc
gattatgctgccgcttttcaccaacgctggtttgaaaaagcagccgatccgggcatgagc
ctgcttgacgccatttcgcaggatatgtggactcagctcaagcaaaggccgcagcgcagt
gacttcaagcccgagacgctggcgacgcacttgttcatgaacttccgggtcattgacgag
catggccgcatgttgtcgggcgggcgcaatctggatcagctcaaggccgagcatggccgt
caggcccaggcctccttccagcaaatggccgccagcgacgaacaggtagcgcaagtgctg
gatcacgagcaactgaccagctggagctttggtgaactgcccgagctgatggaaatcaaa
cgcaaggggcgcagctttattggctacccggccttgatcgacaagaaaacccattgcgat
ctggatgtgttcgatgacccggcccaggcccagcgtcagcaccgtcagggtttgcgccgc
ttgttccgtttggccctgcgcgagcaggtgcgctttctggaaaagaacattacggacctg
actcgtatcagcatgctgtacatcaatctggggacgcaggagcaattgcgtgaccagatt
attgatgtggctctggagcagtcctgcatgatggagccctggcccaagaaccaggccgag
ttcgaggctcgcgtgcaggagggccgcagccgtctgggtctggtggcccaggaagtggcg
cgtctggccgggcagattctgactgaatggagtgccgcccagaagaaactggcgcaaatc
aaggcccaccccgaggctttgaaagacatacagcagcaattgaacgccttgatgcctacc
ttgtttctggaaagcaatgaatacgcgcagttggcgcatatgccgcgttacttgaaagcg
gtacaaacacgggtggacaagctgcgtgccgatccggctcgcgatcaacgcctgatgcag
gatatgtcggttctgctgaccaagtaccagcgtgccgtggccgcgctgaaaggtgcgact
gatagcggtttgcgggattttcgctggatgctggaggaactgcgcgtgtccttgtttgcg
caagagttacgcacccccatgccggtttcggtcaagcgtctggaaaaagcctgggcggcg
ctgcaacgctaa
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