Alcaligenes sp. NLF5-7: MID00_03250
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Entry
MID00_03250 CDS
T10407
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MID00_03250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alcn03400
]
MID00_03250
Enzymes [BR:
alcn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
MID00_03250
DNA repair and recombination proteins [BR:
alcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MID00_03250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
UTM02444
LinkDB
All DBs
Position
complement(681238..682749)
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AA seq
503 aa
AA seq
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MMTLTVNGGYLAWREQALRALAEGWSPEELCWAEASPASGRQGQQIGLEYEASHTPLSPP
VSLQEPHAQQPVSSVSVRISKGLAALLQDAALCRAPVRWALLYRVLWRWHQGDRSVESVA
DEDGARLYEMAKAVRKEKHDMMAYVRFRHCGKGMQPEYWAWFEPEHDVLEWIADYFSKRM
GGTSWCIATPQGLALWDGQNLQLQDAPDNIEALRAGPADDQVEALWLRYYQSIFNPARLN
ETALQQSMPVRFWKGLPEASLIPAMISEARNGARRVGQFSAVARMPGKSVAVEAHSAQPY
RSEPSVLEACRRCGLWEHATQAVPGEGPATARMMLLGEQPGDYEDLAGRVFVGPAGRVLD
QALQRAGIERNALYLSNAVKHFKWKGRGKQRLHVSPSQAEVQACGHWLQEELARLEPAVI
VTLGATALSALLGTQVPLAQYLAKPFLLGQTWVIAAWHPSYALRVDSAARREEIVSSITQ
VLQMGWRLATGSATDAGLAAGIN
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgatgactctaacggtgaacggcggttatctggcctggcgcgagcaggcattacgcgcg
ttggccgagggctggtcgccggaggagctttgttgggcagaagcaagcccggcttcgggg
cggcaagggcagcaaatcgggttggagtatgaagcatcccataccccgctttccccgcct
gtttccttgcaagagccccatgcgcagcagcccgtttccagtgtgtctgtgcgtatttcc
aaagggctggctgccttgctgcaggatgcggccctgtgtcgtgcgccggtgcgttgggct
ttgctttaccgtgtcctgtggcgctggcatcagggtgatcgcagtgtggagtctgtagca
gacgaagatggtgcccgtctgtacgagatggccaaagcggtacgcaaggaaaaacacgac
atgatggcttatgtacggttccgccattgtggcaagggcatgcagcccgagtactgggcc
tggtttgaacccgagcatgatgtgctggagtggattgcagactatttctccaaacgcatg
gggggcacgtcgtggtgtatcgcgacgccgcaagggcttgcactgtgggatggtcagaat
ctgcagctgcaggatgcccccgacaatatagaggcgttacgggctggcccggccgatgat
caggtggaggccttgtggctgcgctattaccaaagcattttcaatcccgctcggctgaat
gaaaccgctctgcagcagagcatgccagtgcgattctggaaaggcctgcccgaagccagc
ttgattcccgccatgattagcgaggcccgtaatggcgcccggcgagtggggcagtttagt
gcggtagcccggatgccgggcaagtcagtcgcggtggaggcccacagcgcacagccttac
cgcagtgaaccgtctgtactggaagcctgtcgtcgctgcggcctttgggagcatgctacg
caagcagtgccgggagaaggcccggcaacagcgcgcatgatgttgctgggcgagcaaccc
ggtgattacgaggatttggcagggcgtgtctttgtcggtcctgcagggcgggttctggat
caggctttgcagcgtgccggtattgaacgcaatgcgctgtatctgagcaatgccgtcaag
catttcaaatggaaagggcgaggcaagcagcgtttgcatgtcagcccctctcaagccgaa
gtgcaggcatgtgggcactggttacaagaagagctggcgcgtcttgaacctgctgtcatc
gtcaccttgggagcgacggccttatctgctttgctgggaacccaagtgccgcttgctcag
tatttggccaagccgtttcttttagggcagacgtgggtaattgcagcttggcatccttcg
tatgcgctgcgtgtggactctgcggcccgccgcgaggaaattgtcagcagtattacccag
gtcttgcaaatgggatggcggctggcaacaggctccgctacggacgcaggcctggccgca
ggtatcaactga
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