Alcaligenes sp. NLF5-7: MID00_03875
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Entry
MID00_03875 CDS
T10407
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn00550
Peptidoglycan biosynthesis
alcn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
MID00_03875 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
alcn01002
]
MID00_03875 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
alcn01011
]
MID00_03875 (dacB)
Enzymes [BR:
alcn01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
MID00_03875 (dacB)
Peptidases and inhibitors [BR:
alcn01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
MID00_03875 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
alcn01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
MID00_03875 (dacB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
UTM02563
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All DBs
Position
complement(825916..827364)
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AA seq
482 aa
AA seq
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MGVLKAKPVLSRCKHVALATLLMVQGASLALAQALPPELASVWNASRLPQSSLSIVVDEV
DGPRLIGVNPQEPRNPASVMKLVSTWAGLSALGPEYTWRTTLMAQDGLQVDEQGTLKGPL
YIKAGGDPFLTVPQLWDMLRELRLRGVKNLTEVIVDRSIFGNVTINPGDFDNAGDRPYNA
SPDAMMVGLGASRLVFQPDTQARKWIAIIDPPLPGVRVQGEVEWSTATCPGSPVVGTQIQ
PEAGGMVVRVSGKAAASCGEFSVYRLVHSQTEFFDKLFRSLWRDLGGTLARDIKAGRVPA
RAQAITWHDSQSLSDLIRLINKQSNNVMARTILLTVGAEMNGPGATVATGERAVMNVLGR
QGVNTAGWTVDNGSGLSRNARVTAGGMADMLKVAWRSNWMPEYISSFAISGVDGTVRSRL
RDDEVQGRAHLKTGTLRDSRALAGYVLGASGKRYIVVMMVNDERSASARPFFDAVVKWLA
VR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttttaaaggcaaagcctgttttgagtcgttgcaagcacgtggctctggccacc
ttgctcatggtgcaaggcgcatcactagccctagcccaggccttgccgcccgagctggct
tcggtatggaacgccagccgcttgccgcaatcgtctctgtccatcgtggtagacgaggtg
gacggtccgcgcctgatcggcgtcaatccccaggagccccgtaaccccgcatcggtaatg
aaactggtcagtacctgggccggtttgtccgctctggggccagaatatacctggcgtacg
acgttaatggcccaggacggcctgcaggtggacgaacaaggcactttgaaagggcctctg
tacatcaaggcggggggcgatccgtttttgaccgtgccgcagttatgggacatgttgcgc
gagctccgcttgcgtggggtgaagaatctgaccgaagttattgtggatcgttccatcttc
ggcaacgtcaccatcaatccgggtgatttcgataatgcgggtgaccgtccctataacgcc
agcccggatgccatgatggtggggctaggcgcttcccggctggtgttccagccagataca
caggcgcgcaaatggattgcgattattgacccgcctttgcccggagtgcgcgtacagggt
gaagtcgagtggtcgacggcgacctgccctggttcgcctgttgttggtacccagattcag
cctgaagccggtggcatggtggtccgtgtcagtggcaaggccgccgcttcttgcggtgag
ttcagcgtttaccgtctggttcattcccaaaccgagtttttcgacaagctgttccgcagc
ctgtggcgcgatctgggcggcaccctggcccgcgacatcaaagcaggccgtgtgccggct
cgtgcgcaggcgattacctggcatgactcgcagtccctgtctgacctgatccgtcttatt
aataagcaaagcaacaatgtgatggcccgtaccatcttgctgaccgtgggcgcagaaatg
aatggtcccggtgccacggtggccaccggcgagcgcgccgtcatgaacgtgctgggtcgc
cagggcgtgaataccgcaggctggaccgtggacaacggctcgggcctgtcacgcaatgcc
cgcgtcacggcgggcggcatggctgacatgctgaaagtcgcctggcgctcgaactggatg
cccgagtacatttcgtcctttgcgatctccggtgtggacggcacggtgcgttcgcgcttg
cgcgatgacgaggttcagggccgtgcccacttgaaaaccggcacgctgcgcgatagtcgt
gccttggccggttacgtgctgggagccagcggaaagcggtatattgtcgtcatgatggtc
aatgacgaacgttctgcctctgcccgacccttttttgatgcggtggtgaagtggctggca
gtacgttga
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