Alcaligenes sp. NLF5-7: MID00_06255
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Entry
MID00_06255 CDS
T10407
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MID00_06255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alcn03400
]
MID00_06255
Enzymes [BR:
alcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MID00_06255
DNA repair and recombination proteins [BR:
alcn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MID00_06255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
PriA_C
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_30
AAA_16
AAA_22
TetR_C_31
Zn_ribbon_6
Zot
PIF1
DUF3638
AAA_33
RecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UTM03012
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Position
complement(1330517..1332610)
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AA seq
697 aa
AA seq
DB search
MTATPDAISASASTGPFWLHVALDVPLDGVFDYQHHEPVLIGQRVIVHFGRRQMIGVVVA
LPEQPSYPPEQVKAIDQLLDDLPPFPQDWLRMARFASTYYHRPLGEVMMPSLPGPLRKPS
AYLGKRSAGGPVLRMAKRKEKKVEPVDSDVLPVLNAEQQAAVDGIVAAKPGSCLLLHGVT
GSGKTEVYMRVLEQVLAAGRQVLFMVPEINLTPQFEQVLRARLARVLPGDVLAVLHSGLS
EGERLRSWLRVNSGQARILLGTRLSIFTPMPELGLIIVDEEHDASYKQQDGLRYSARDLA
VWRGYDLKVPVVLGSATPSLESWNHARQGRYSLLSLPKRAREVSLPRVRLVDTRHLRLES
GFSPQLLDALEACLERGEQSLVFINRRGYAPVLHCASCGWLSQCPRCTVYTVLHRQNGFK
HNLQCHHCGYQAPVPRACPDCGDQDLQPMGRGTQRIEEFLGERFPNARLVRIDADSTRLK
GSAQQLFEQVHAGEVDIMVGTQMVAKGHDFTRLSVVGVLNADATLFAHDFRAPERLFAQL
MQVAGRAGRHTEGADVIIQTGYPEQAVYQSLIKHDYIGFAQSALNERESVGLPPFAYQVL
LSAEAPQLADAIRLLTQARRLPEEYPNEFPGADQVFLYDPVPLRVLRVAKVERAQLLLES
AHRPALQAFVRYWGPQVAQLAKQYKVRITIEVDPLEI
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccactcctgacgctatttctgcatcggcaagcaccggacctttctggctgcat
gtggctttggacgttcccctggatggggtgtttgattatcagcaccacgaacccgtcctg
atcggacagcgggtcattgtgcattttgggcggcggcagatgataggcgtggtggtggct
ttgccggagcaaccttcctacccgcccgagcaggtcaaagcgattgatcagctgctggat
gacttgccgcctttcccgcaggactggttgcggatggcgcgctttgcgtctacctattac
caccgtccgctgggcgaggtcatgatgccgtccttgccagggccgttgcgcaaaccctct
gcctatctgggcaagcgttccgctggtgggccggtattgcgcatggccaagcgcaaggaa
aagaaggtggagccggtggacagcgacgtcctgcccgtgctcaatgccgagcagcaggct
gcggtagatggcattgtggcggccaaacccggaagctgcctattgctgcatggcgtaacg
ggtagcgggaaaaccgaagtctatatgcgggtgctggaacaagtgctggccgctggtcgg
caagtcctgttcatggtgcccgaaatcaatctgacgcctcagttcgagcaggtcctgcgt
gcccgcttggcgcgcgtcctgcccggcgatgtgctggctgtcttgcatagtggtctgtcc
gaaggtgaaaggctgcgctcctggttgcgcgtcaacagtggtcaggcgcgcattttgttg
ggaacacggctgtccatcttcacgcccatgcccgagctgggcctgattattgtggacgag
gagcacgacgcttcttacaaacagcaagatggcttgcgttactccgctcgggatctggct
gtgtggcgtggctacgatctgaaagtgccagtggtgctgggttcagccaccccttcgctg
gaaagctggaatcatgcccgacaagggcgctatagcctgttgagcctgcccaagcgtgcg
cgagaggtttccttgccccgagtgcgtctggtcgatacccgccatttgcgcctggagtcg
ggcttttctccccaactgctggatgcgctggaagcatgtctggagcgcggcgagcaatcg
ctggttttcattaaccggcgtggctacgcgcctgtgctgcattgcgcctcttgcggctgg
ctgtctcaatgtccgcgttgcacggtgtacaccgtgctgcaccggcaaaatggcttcaag
cacaatttgcagtgccaccattgcggttatcaggcccccgtgccgcgtgcttgcccggat
tgcggcgatcaggacttgcagcctatggggcgtggcactcaacgtattgaagagtttctg
ggcgagcgttttcctaatgcccgcctggtgcgtatcgacgcggacagtacccgcttgaag
ggcagcgcgcagcaattgttcgagcaggtgcatgcgggcgaagtggacatcatggtgggc
acccagatggtggccaaaggtcatgacttcacccgcttgagcgtcgtcggtgtgctcaat
gccgatgctaccttgttcgcccatgatttccgcgcgcccgagcgtctgtttgctcaactg
atgcaggtagcaggccgggccggtcgccataccgaaggggcggatgtcatcatccagacg
ggctacccggagcaggccgtttatcaaagcctgatcaagcacgattacataggctttgct
caaagcgccttgaacgagcgcgagtccgtgggcttgccgccttttgcctatcaggtgctt
ctgtctgccgaagcgccgcaattggcagatgccattcgcttgttgacccaggcacgtcgt
ttgcctgaagaatatccgaatgaatttccgggcgcggatcaggttttcctgtacgatccc
gtgcccttacgtgttttgcgcgttgccaaagtggagcgtgcccagttgctgttggaaagc
gcccatcgtccggccttgcaagcctttgtgcgctattgggggccacaggtcgcgcagttg
gccaagcagtataaagtgcgcattacgattgaggttgatcctctcgaaatttaa
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