Alcaligenes sp. NLF5-7: MID00_08200
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Entry
MID00_08200 CDS
T10407
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MID00_08200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alcn03021
]
MID00_08200 (rpoC)
03400 DNA repair and recombination proteins [BR:
alcn03400
]
MID00_08200 (rpoC)
Enzymes [BR:
alcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MID00_08200 (rpoC)
Transcription machinery [BR:
alcn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MID00_08200 (rpoC)
DNA repair and recombination proteins [BR:
alcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MID00_08200 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UTM03377
LinkDB
All DBs
Position
1754373..1758635
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQVTQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVSKVRRERMGHIELACPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDREVERLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKPDWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLELMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRELVNGKGEGLFMADVAEVQRAYDNK
EVELQTRLTVRIEEFEKGEDGEWVKTIKRYETTAGRALLSEILPKGMPFTALNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMNDMVVPVVKESILAQASNE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDRVGKAMMEQLASEPVINRFGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTKGGYTMKAILDGGEVIEPLRDLIL
GRVASTDIVNPDNQELVIPAGTLLNEDLVDLIDNLGIDEVKIRTPLTCETRHGLCASCYG
RDLGRGMLVNRGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAALASSVETKTAGTVGF
EIGLRYVTNAKGERVAISRSGEIVIFDDNRRERERHKVPYGATITVGDGEAIKAGQRLAS
WDPLTRPIVSEYTGTVRFENIEEGVTVARQVDEVTGLSTLVVITPKTRGGKITMRPQIKL
LNEQGQEIKIAGTDHMVNISFPVGALITVRDGQQVSVGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGLLAEVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKEKQVLAHDG
QVVNKGEMIVDGPADPHDILRLKGIEKLANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTNFITGEQVERSELLNENDRVLAENGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGMAFHSARKEKEAFEVAERK
AARELENPFASAPEPSEDPVFVSGASEPEQQPAAPEGDQE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctctttaaacaagtcactcaggacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaatccggtcctggtctttcggtgaagtccgcaag
ccagagaccatcaactatcgcacgttcaaacccgagcgcgatggtctgttctgcgccaag
atttttggtcccatcaaggactacgaatgtctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtcatctgcgagaagtgtggcgttgaagtcaccgtctccaaggtgcgtcgcgag
cgtatgggtcacattgaactggcctgcccggttgctcacatctggttcctgaagagcctg
ccatcccgtctgggcatggtgctggacatgacactgcgtgacatcgagcgcgtgctgtac
tttgaagcatggtgcgtaatcgaacctggcatgaccccgctcaagcgcggtcagatcatg
tccgatgacgatttcctggccaagactgaagagtacggtgacgacttccacgccctgatg
ggcgcggaagcggtgcgcgaactgctgcgtacgatcgacatcgatcgcgaagtcgagcgc
ctgcgtgccgaactgaaagccaccggctcggatgccaagatcaagaagatctccaagcgt
ttgaaagtgctggaaggcttccagaaatccggcatcaagccagactggatgatcatggaa
gtgctgcccgtgctgccaccggacctgcgtccgctggtaccactggacggcggccgcttt
gcgacttccgacctgaacgatctgtaccgccgcgttatcaaccgtaataaccgtttgaag
cgtctgctggaactgaaggcaccggacatcatcttgcgcaacgaaaaacgtatgctgcaa
gagtccgtggactccttgctggataacggtcgtcgcggtaaagccatgaccggcgccaac
aagcgtcaactgaagtccctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactccggtcgttccgtgattgtagtgggtcctcag
ttgaagctgcaccagtgcggtctgcccaaactgatggcgctggaactgttcaagccgttc
atcttcaaccgtctggaattgatgggtctggctacgaccatcaaggcagccaagaagttg
gtggaaagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccc
gtgatgctgaaccgtgcgcctacgctgcaccgtttgggtattcaggcttttgaaccggtc
ctgatcgaaggtaaagcgattcagctgcaccctctggtgtgtgccgcctttaacgctgac
tttgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcccagctggaagcg
cgcactttgatgctggcctccaacaacgtgctgttccccgccaacggcgaaccatccatc
gttccttcccaggatatcgtgttgggtctgtactatgcgacccgcgaactggtaaacggc
aagggcgaaggcttgttcatggccgacgtggctgaagttcagcgcgcttacgacaacaag
gaagtcgagctgcaaactcgtctgaccgtccgtatcgaagaattcgagaagggcgaagac
ggtgagtgggtcaagaccatcaagcgttacgaaacgactgctggccgtgccttgctgtca
gaaattctgcccaagggcatgcctttcaccgcactgaaccgtgcgttgaagaagaaagaa
atttcgcgtctgatcaaccagtccttccgtcgctgcggcctgcgtgccaccgtgattttt
gccgacaagttgatgcagtccggtttccgtctggcaactcgtggtggtatttccatcgcc
atgaatgacatggttgtgcctgtcgtcaaggaaagcatcctggctcaggctagcaacgaa
gttaaagaaattgacaagcagtactcttcgggtctggtgaccgctcaggaacgctacaac
aacgtagtggacatctggggcaaagccggtgaccgcgtgggtaaggccatgatggaacag
ctggcttccgagccagtgatcaaccgctttggtgaagaagtacgtcaagagtccttcaac
tccatctacatgatggcggactccggtgctcgtggttcggctgcacagattcgtcagctg
gctggtatgcgtggtctgatggccaagcctgatggctccattattgaaacgcctattacc
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttcgactcacggtgctcgt
aagggtctggccgacacggccttgaagacggctaactccggttacctgactcgtcgtctg
gtcgacgtgactcaagatctggtcattaccgaagacgattgcggtaccaagggcggctac
accatgaaagccatcctggatggtggtgaggttatcgagcccctgcgcgatctgattctg
ggccgtgtggcctcgaccgacatcgtcaaccctgacaatcaggaactggttatccccgcc
ggcaccttgctgaacgaggacctggtcgacctgatcgacaacctgggtattgatgaagtc
aagatccgcactccgctgacttgcgaaacccgtcacggcttgtgcgcaagctgctacggc
cgcgatctgggccgcggtatgctggttaaccgtggtgaagccatcggtgttatcgctgcg
cagtccatcggtgaaccgggtacccagctgaccatgcgtacgttccacattggtggtgcg
gcttcgcgtgcagcgctggcaagctcggtggaaaccaagacggctggtacggtcggtttt
gaaattggtctgcgttatgtgaccaacgccaagggcgaacgcgttgcgatctcccgttcc
ggtgaaatcgttatttttgacgacaaccgtcgtgaacgtgaacgccacaaagtgccttac
ggtgccaccattacggtgggcgatggtgaagccatcaaggctggccagcgtctggcaagc
tgggatccgctgacccgtcctatcgtgtccgagtacaccggtaccgttcgcttcgagaac
atcgaagaaggcgtgaccgtggctcgtcaggtggacgaagtgaccggtctgtcgactctg
gttgtgatcactcccaagacacgtggtggcaagatcaccatgcgtcctcagatcaagctg
ctgaacgagcaaggtcaggagatcaagatcgctggtaccgatcacatggtcaatatctcc
ttcccggtgggcgcgttgattaccgttcgcgacggtcagcaagtgtccgtgggtgagatt
ctggcgcgtattccccaggaatcgcaaaagactcgagacattaccggtggtctgccacgt
gtggccgaactgttcgaagctcgttcgcccaaggacgccggcctgctggccgaagttacg
ggtacggtttccttcggtaaggacaccaagggcaaacagcgtctggtcattaccgacctg
gacggcgtcagccacgagttcctgattccgaaggaaaaacaggttctggctcacgacggt
caagtggtgaacaagggcgagatgattgtggacggcccagccgatccgcacgacatcctg
cgcttgaagggtatcgagaagctggccaactacattgttaacgaagtgcaggacgtttac
cgtctgcagggtgtgaagatcaacgacaagcacattgaagtgattgttcgtcagatgctg
cgccgcgtgaacattgtggatgccggtgatactaacttcatcacgggtgaacaggttgaa
cgctccgaactgttgaacgagaacgatcgcgttctggccgaaaacggtattccagctacg
tacgaaaacgtgctgctgggtattaccaaggcctcgctgtcgaccgactccttcatctcg
gcggcttccttccaggaaaccacccgcgtgttgactgaagcggccatcatgggcaaaacc
gacgatctgcgtggtctgaaagaaaacgtgatcgtgggtcgtctgattcctgctggtacc
ggtatggccttccattccgcccgcaaggaaaaagaagcctttgaagtggcagagcgcaaa
gcagcccgtgaactggaaaacccgtttgcgtcggctcctgagccttcggaagacccggtc
tttgtgtccggcgcctccgagcccgagcagcaacctgcagccccagagggcgatcaggaa
taa
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