| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
alcn Alcaligenes sp. NLF5-7
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| Pathway |
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| Brite |
Enzymes [BR:alcn01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MID00_08200 (rpoC)
Transcription machinery [BR:alcn03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MID00_08200 (rpoC)
DNA repair and recombination proteins [BR:alcn03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MID00_08200 (rpoC)
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| SSDB |
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| Other DBs |
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| LinkDB |
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| Position |
1754373..1758635
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| AA seq |
1420 aa
MKALLDLFKQVTQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVSKVRRERMGHIELACPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDREVERLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKPDWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLELMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRELVNGKGEGLFMADVAEVQRAYDNK
EVELQTRLTVRIEEFEKGEDGEWVKTIKRYETTAGRALLSEILPKGMPFTALNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMNDMVVPVVKESILAQASNE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDRVGKAMMEQLASEPVINRFGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTKGGYTMKAILDGGEVIEPLRDLIL
GRVASTDIVNPDNQELVIPAGTLLNEDLVDLIDNLGIDEVKIRTPLTCETRHGLCASCYG
RDLGRGMLVNRGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAALASSVETKTAGTVGF
EIGLRYVTNAKGERVAISRSGEIVIFDDNRRERERHKVPYGATITVGDGEAIKAGQRLAS
WDPLTRPIVSEYTGTVRFENIEEGVTVARQVDEVTGLSTLVVITPKTRGGKITMRPQIKL
LNEQGQEIKIAGTDHMVNISFPVGALITVRDGQQVSVGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGLLAEVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKEKQVLAHDG
QVVNKGEMIVDGPADPHDILRLKGIEKLANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTNFITGEQVERSELLNENDRVLAENGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGMAFHSARKEKEAFEVAERK
AARELENPFASAPEPSEDPVFVSGASEPEQQPAAPEGDQE |
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| NT seq |
4263 nt +upstreamnt +downstreamnt
atgaaagcgctactcgatctctttaaacaagtcactcaggacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaatccggtcctggtctttcggtgaagtccgcaag
ccagagaccatcaactatcgcacgttcaaacccgagcgcgatggtctgttctgcgccaag
atttttggtcccatcaaggactacgaatgtctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtcatctgcgagaagtgtggcgttgaagtcaccgtctccaaggtgcgtcgcgag
cgtatgggtcacattgaactggcctgcccggttgctcacatctggttcctgaagagcctg
ccatcccgtctgggcatggtgctggacatgacactgcgtgacatcgagcgcgtgctgtac
tttgaagcatggtgcgtaatcgaacctggcatgaccccgctcaagcgcggtcagatcatg
tccgatgacgatttcctggccaagactgaagagtacggtgacgacttccacgccctgatg
ggcgcggaagcggtgcgcgaactgctgcgtacgatcgacatcgatcgcgaagtcgagcgc
ctgcgtgccgaactgaaagccaccggctcggatgccaagatcaagaagatctccaagcgt
ttgaaagtgctggaaggcttccagaaatccggcatcaagccagactggatgatcatggaa
gtgctgcccgtgctgccaccggacctgcgtccgctggtaccactggacggcggccgcttt
gcgacttccgacctgaacgatctgtaccgccgcgttatcaaccgtaataaccgtttgaag
cgtctgctggaactgaaggcaccggacatcatcttgcgcaacgaaaaacgtatgctgcaa
gagtccgtggactccttgctggataacggtcgtcgcggtaaagccatgaccggcgccaac
aagcgtcaactgaagtccctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactccggtcgttccgtgattgtagtgggtcctcag
ttgaagctgcaccagtgcggtctgcccaaactgatggcgctggaactgttcaagccgttc
atcttcaaccgtctggaattgatgggtctggctacgaccatcaaggcagccaagaagttg
gtggaaagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccc
gtgatgctgaaccgtgcgcctacgctgcaccgtttgggtattcaggcttttgaaccggtc
ctgatcgaaggtaaagcgattcagctgcaccctctggtgtgtgccgcctttaacgctgac
tttgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcccagctggaagcg
cgcactttgatgctggcctccaacaacgtgctgttccccgccaacggcgaaccatccatc
gttccttcccaggatatcgtgttgggtctgtactatgcgacccgcgaactggtaaacggc
aagggcgaaggcttgttcatggccgacgtggctgaagttcagcgcgcttacgacaacaag
gaagtcgagctgcaaactcgtctgaccgtccgtatcgaagaattcgagaagggcgaagac
ggtgagtgggtcaagaccatcaagcgttacgaaacgactgctggccgtgccttgctgtca
gaaattctgcccaagggcatgcctttcaccgcactgaaccgtgcgttgaagaagaaagaa
atttcgcgtctgatcaaccagtccttccgtcgctgcggcctgcgtgccaccgtgattttt
gccgacaagttgatgcagtccggtttccgtctggcaactcgtggtggtatttccatcgcc
atgaatgacatggttgtgcctgtcgtcaaggaaagcatcctggctcaggctagcaacgaa
gttaaagaaattgacaagcagtactcttcgggtctggtgaccgctcaggaacgctacaac
aacgtagtggacatctggggcaaagccggtgaccgcgtgggtaaggccatgatggaacag
ctggcttccgagccagtgatcaaccgctttggtgaagaagtacgtcaagagtccttcaac
tccatctacatgatggcggactccggtgctcgtggttcggctgcacagattcgtcagctg
gctggtatgcgtggtctgatggccaagcctgatggctccattattgaaacgcctattacc
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttcgactcacggtgctcgt
aagggtctggccgacacggccttgaagacggctaactccggttacctgactcgtcgtctg
gtcgacgtgactcaagatctggtcattaccgaagacgattgcggtaccaagggcggctac
accatgaaagccatcctggatggtggtgaggttatcgagcccctgcgcgatctgattctg
ggccgtgtggcctcgaccgacatcgtcaaccctgacaatcaggaactggttatccccgcc
ggcaccttgctgaacgaggacctggtcgacctgatcgacaacctgggtattgatgaagtc
aagatccgcactccgctgacttgcgaaacccgtcacggcttgtgcgcaagctgctacggc
cgcgatctgggccgcggtatgctggttaaccgtggtgaagccatcggtgttatcgctgcg
cagtccatcggtgaaccgggtacccagctgaccatgcgtacgttccacattggtggtgcg
gcttcgcgtgcagcgctggcaagctcggtggaaaccaagacggctggtacggtcggtttt
gaaattggtctgcgttatgtgaccaacgccaagggcgaacgcgttgcgatctcccgttcc
ggtgaaatcgttatttttgacgacaaccgtcgtgaacgtgaacgccacaaagtgccttac
ggtgccaccattacggtgggcgatggtgaagccatcaaggctggccagcgtctggcaagc
tgggatccgctgacccgtcctatcgtgtccgagtacaccggtaccgttcgcttcgagaac
atcgaagaaggcgtgaccgtggctcgtcaggtggacgaagtgaccggtctgtcgactctg
gttgtgatcactcccaagacacgtggtggcaagatcaccatgcgtcctcagatcaagctg
ctgaacgagcaaggtcaggagatcaagatcgctggtaccgatcacatggtcaatatctcc
ttcccggtgggcgcgttgattaccgttcgcgacggtcagcaagtgtccgtgggtgagatt
ctggcgcgtattccccaggaatcgcaaaagactcgagacattaccggtggtctgccacgt
gtggccgaactgttcgaagctcgttcgcccaaggacgccggcctgctggccgaagttacg
ggtacggtttccttcggtaaggacaccaagggcaaacagcgtctggtcattaccgacctg
gacggcgtcagccacgagttcctgattccgaaggaaaaacaggttctggctcacgacggt
caagtggtgaacaagggcgagatgattgtggacggcccagccgatccgcacgacatcctg
cgcttgaagggtatcgagaagctggccaactacattgttaacgaagtgcaggacgtttac
cgtctgcagggtgtgaagatcaacgacaagcacattgaagtgattgttcgtcagatgctg
cgccgcgtgaacattgtggatgccggtgatactaacttcatcacgggtgaacaggttgaa
cgctccgaactgttgaacgagaacgatcgcgttctggccgaaaacggtattccagctacg
tacgaaaacgtgctgctgggtattaccaaggcctcgctgtcgaccgactccttcatctcg
gcggcttccttccaggaaaccacccgcgtgttgactgaagcggccatcatgggcaaaacc
gacgatctgcgtggtctgaaagaaaacgtgatcgtgggtcgtctgattcctgctggtacc
ggtatggccttccattccgcccgcaaggaaaaagaagcctttgaagtggcagagcgcaaa
gcagcccgtgaactggaaaacccgtttgcgtcggctcctgagccttcggaagacccggtc
tttgtgtccggcgcctccgagcccgagcagcaacctgcagccccagagggcgatcaggaa
taa |
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