Alcaligenes sp. NLF5-7: MID00_10170
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Entry
MID00_10170 CDS
T10407
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
alcn Alcaligenes sp. NLF5-7
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
alcn03009
]
MID00_10170 (rimO)
Enzymes [BR:
alcn01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
MID00_10170 (rimO)
Ribosome biogenesis [BR:
alcn03009
]
Prokaryotic type
ribosomal protein modification factors
MID00_10170 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAM_2
Radical_SAM
UPF0004
TRAM
CLP1_P
YajR_YAM
Motif
Other DBs
NCBI-ProteinID:
UTM03746
LinkDB
All DBs
Position
complement(2209245..2210564)
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AA seq
439 aa
AA seq
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MSAPKVGFVSLGCPKALVDSERILTQLRTDGYQITPSYDNADVVVVNTCGFIDSAKAESL
EAIGEALAENGRVIVTGCMGVDEGLIRDVHPSVLSVSGPQQYEQVLRAVREAAPPSLDHN
PYIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLGEAERLVK
AGVKELLVISQDTSAYGVDIRQRTGFWNGRPVKSSMLDLSAALSELGAWVRLHYVYPYPH
VDNIIPLMAEGKVLPYLDIPFQHASPSVLRAMKRPAFEDRTLSRIKQWRQDCPDLTIRST
FIVGFPGETEEDFQYLLDWMTEAQLDRVGCFQYSPVEGAPANKLDGIVPDEVKQERWERF
MEHQQAISTARLAAKVGREMDVLIDEIDEDGDAVGRSSADAPEIDGNVFITSEQKLEPGQ
MVRVRITDSSEYDLFGEQI
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccccaaagtcggattcgtgagcctgggttgtcccaaggccctggtcgattcc
gaacgaattcttacccagctgcgtaccgacggctatcagatcacccccagctacgacaat
gcggatgtggtggtggtcaatacctgtggctttatcgacagcgccaaggctgaatcgctg
gaagcgatcggcgaggcactggctgagaacggccgtgtcattgtcaccggttgtatgggt
gtggacgaaggattgattcgcgacgtacacccctcggtgctgtccgtcagcggcccccag
caatatgaacaagtcctgcgtgccgtgcgtgaagccgccccgccctcgctggaccacaat
ccctacattgatctggtaccgccacaaggcatcaagctgaccccgcgtcactacgcctac
ctgaagatttccgaaggctgtaaccacagctgcagcttctgtattatcccgtccatgcgc
ggcaagctcgtcagccgtcctgtcggcgaggtgctgggcgaagccgagcgtctggtcaag
gcaggtgtcaaagagctgctggtgatctcgcaggacaccagcgcctacggcgtggacatc
cgccagcgcaccggcttctggaatggccgccccgtcaagagcagcatgctggacttgagc
gccgccctgtccgagctgggtgcgtgggtgcgtctgcactacgtctacccctacccgcat
gtggacaatatcattcccctgatggccgagggcaaagtgctgccgtacctggatatcccc
ttccagcacgccagcccttccgtgctgcgcgccatgaagcgccctgcgtttgaggaccgc
accctgtctcgcatcaagcaatggcgtcaggactgcccggatctgaccatccgctccact
ttcatcgtgggcttccccggcgaaaccgaggaagacttccagtacctgctggactggatg
accgaagcccagctggatcgcgtcggctgtttccagtactcccccgtggaaggcgccccc
gccaacaaactcgacggcatcgtccctgacgaagtcaagcaagagcgctgggaacgcttc
atggaacatcagcaagccatctccaccgctcgcctggctgccaaagtgggccgcgaaatg
gacgtgctgattgatgagatcgacgaagacggcgatgccgttggccgctccagcgccgac
gcccccgaaattgacggcaacgtcttcatcaccagcgaacaaaaactggaacccggccag
atggtgcgcgtgcgtattacggattccagtgaatatgacttgtttggtgaacagatttaa
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