Alcaligenes sp. NLF5-7: MID00_12505
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Entry
MID00_12505 CDS
T10407
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MID00_12505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alcn03019
]
MID00_12505
Enzymes [BR:
alcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MID00_12505
Messenger RNA biogenesis [BR:
alcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MID00_12505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UTM00320
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All DBs
Position
2719254..2720630
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AA seq
458 aa
AA seq
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MTDKTPSTPNDLTFADFGLHPGILSAVTEAGYSKPTPIQAEAIPVVLAGRDVMGAAQTGT
GKTAAFSLPILNRLMAHATTSASPARHPVRALVLTPTRELADQVAESIALYSKSVPLRST
VVFGGVDIGPQKEALRRGVEIVIATPGRLLDHIDQRTINLSQVSILVLDEADRMLDMGFL
PDLDRIVSLLPKNRQGLLFSATFSKEIRKLARNFLNDPVEIEVAARNATASTVTQVVYPM
SADEKRRAVAHLIKTKKLTQTIVFSNTKIGAGQLARYLEREGIKAESIHGNKSQLERMKV
LDAFKSGSVDVLVATDVAARGLDVAGMPCVINVDLPYNAEDYVHRIGRTGRAGASGEAIA
LMAPDEEHLLQEIEKLIGTAVPRLKLDLPAAASSSRSGSNRHERGERRSYQSNTPPVDEF
FLKPYEPSTAAAPKPAVTTPSNTTRKRSVGVLLGGGRY
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaaactccttcgacccccaatgaccttacgtttgctgatttcggtctgcac
cctggaatattaagcgccgttaccgaggcgggatattccaagcctacgcctattcaggcc
gaggcgattcccgtggtgctggccggccgtgatgtcatgggggcagcccagacgggtaca
ggtaagacggcagccttttccttgcctatcctgaatcgtctgatggcgcacgccacgacc
agcgcttcgcccgcccgccacccggtgcgggctttggtgttgacaccaacacgcgagctg
gccgaccaggtggccgagagcattgcgctctacagcaaatcggtccccttgcgctcgacg
gtggtgttcggtggtgtggatattggtccgcaaaaagaagccctgcgccgtggtgttgaa
attgtcatcgccaccccaggtcgtctgcttgatcacattgatcagcgcacgatcaacttg
agccaggtcagcattctggtgctggatgaagctgatcgcatgctggatatgggcttcctg
cccgatctggaccgtattgtgtccttgctgcccaagaatcgtcagggcctgttgttctcg
gcgacgttcagcaaggaaatccgcaagctggcccgcaacttcctgaatgatccggtcgag
atcgaagtggctgcccgtaacgcgaccgcatcgacagtcacccaggtggtgtatcccatg
tcggcggacgagaagcgtcgtgccgtggcgcatctgatcaagaccaagaagctgacccag
actatcgtcttttccaataccaagattggtgctggtcaactggcccgctatctggagcgt
gaaggcatcaaggcggaatccatccacggcaataaaagccagctggagcgcatgaaggta
ctggacgccttcaagagcggcagtgtggatgtgttggtagcaactgatgtggccgcccgc
ggtctggacgtggccggtatgccttgcgtgatcaacgtggacttgccgtacaacgctgaa
gactacgtgcaccgtattggccgtactggtcgtgctggcgcctcgggtgaagccattgcc
ctgatggctcctgatgaagagcatttgctgcaagaaattgagaagctgattggcacggct
gtgccacgtctgaagctggatctgccagcggctgcctcctcgtcccgttccggttccaac
cgtcacgagcgtggcgagcgtcgttcgtatcagtcgaacacgccacccgtggatgaattt
ttcctcaagccttacgagccatcgaccgctgctgcgcccaagccagcggtgacgactcct
tccaatacaacgcgcaagcgttcggtgggtgtgctgttaggcggcggccgctactaa
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