Alcaligenes sp. NLF5-7: MID00_14230
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Entry
MID00_14230 CDS
T10407
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MID00_14230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alcn03019
]
MID00_14230
03009 Ribosome biogenesis [BR:
alcn03009
]
MID00_14230
Enzymes [BR:
alcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MID00_14230
Messenger RNA biogenesis [BR:
alcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MID00_14230
Ribosome biogenesis [BR:
alcn03009
]
Prokaryotic type
rRNA processing factors
MID00_14230
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
UTM00649
LinkDB
All DBs
Position
complement(3095642..3098983)
Genome browser
AA seq
1113 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSY
GEERHGFLPFKEVARSYFKEGVDVRSARIQDALVEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAMDQLDIPQGMSIIARTAGIGRSVEELQ
WDLNYLMQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPDIGEILIDTDEIHEQAA
AFMSVVMPDNLHRVKMYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAI
DVNSARSTRGADIEETALRTNQEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHLDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH
VLRLLQEEAMKEGTAALHAQVPVDVATFLLNEKRADITKIESRLNIALILIPNKNLETPH
HIIERLRHDDPRLDELRSSYELVQQPEQQDSLVPHRSHEIKPRPEALVKSTTPAQPAPMS
KPAAAAAASAAASDNKPGLLKRLLNWLSGAPAEPVAETTKSESSKSSSGRRQGRPGQSNS
GRGQGGRGRRQSNRPEAAQEEKASTENTGSNTRGRRRNASAGNESALETPQSANTTPATA
DEGSSNSRNPRNRRGRGRQRREEGSTENVELNKDVASTEAQHEQAAAAVASVAVVAAVAA
TKQEAQTRAEQLAEADSADTSDNSDAETDENSENGALDPERKRRRRRSRRGRRNTDANAV
AENEENNEEGNTSAYVAHETPSFNPAALDAQEQAAAQTAAAEPEQPQAAVEAPAAQEAAP
VAVEASQEAPAATPAAQQTEEVATTQVSAVETAPAQEEVATPAVQAEVAPEAPAAEETVA
PVQAEAAAEPAKAEVTEAQAEAVETAAAPAETQAAAETPAVEAAPVETAAVETATAQEEV
AAPAAQAEVAPEAPAAEEAVAPAQAEVAAEPAKAEATEAQAEAVETTATPAEAQPAVEAP
AVEATPVETTAVETRVETQTTAAAKAPAAEQAQKPTAAPLEAVLNAAGIELVETVRSATQ
DDYQPAPVRLGRPRKQRAAETENSEPLQQVETQ
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcatcaagaagaactacgcgtcgccattgtcgac
ggtcaaaaactgattgacctcgacatcgaaacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggggtcatcacccgcatcgaacccggcctggaagcctgcttcgtcagctac
ggtgaagagcgtcacggctttctgccattcaaggaagtagctcgcagctacttcaaggaa
ggggttgatgtacgcagcgcccgcatccaggacgccctggttgaaggccaggaactgatc
atccaggttgaaaaagaagagcgtggcaacaagggcgctgccctgaccaccttcatttcc
ctggcaggccgctatctggttctgatgcccaacaacccccgtgggggtggcgtatcgcgc
cgcgttgaaggcgaagaccggcaggaactgcgcgaagccatggaccagctggacattccg
cagggcatgagcatcatcgcccgcaccgcaggtatcggccgcagcgtcgaagagctgcag
tgggacctgaactacctgatgcagttgtggaccgccattgacggcgctgcccgcgacaat
gcagctcctatcctgatttatctggaatccagcctggttatccgggccatccgcgattac
ttctcgcccgatattggcgaaatcctgatcgacacggacgagattcacgagcaggccgcc
gctttcatgagcgtggtcatgcccgacaatctgcatcgcgtaaagatgtaccgcgatgac
atcccgctgttctcgcgctttcagatcgaacaccagatcgaaaccgcctactcgcgtacc
gtgcaattgccttcgggcggtgctgtcgttatcgaccacaccgaggccctggttgccatt
gacgtgaactcggctcgctccacgcgtggtgccgacattgaagaaaccgccctgcgcacc
aaccaggaagccgccgacgaagtggcccgccagttgcgtttgcgtgacttgggtggcctg
attgttatcgactttatcgatatggaagacagcaagaaccagcgtgctgtcgaacaacgc
ctgcgtgatgccctgcacctggaccgtgctcgcgtccagatgggcaagatctcgcgcttt
ggtctgatggaactgtcccgtcagcgcctgcgccctgccctgaacgaaggctcccacatc
acttgcccacgatgcaccggcactggcgtcattcgtgatgccgaatccagcgccctgcac
gtactgcgtctgctgcaagaagaagccatgaaagaaggcacggccgccctgcacgctcag
gtgccggtggatgtggctaccttcctgctgaacgaaaaacgcgctgacatcaccaagatc
gaatcgcgcctgaacattgccctgatcctgattccgaacaagaatctggaaaccccacac
cacatcatcgagcgcctgcgccacgacgacccccgtctggacgaactgcgcagcagctac
gagctggtccagcagcctgagcagcaagacagcttggtgccgcaccgcagccacgaaatc
aagcctcgtccagaagccctggtcaagagcaccacaccggcccagccagctcccatgagc
aagcctgctgccgccgcagccgccagcgccgctgctagcgacaacaagcccggcctgctc
aagcgcctgctgaactggttgtccggcgcacctgccgaacccgtggccgagaccaccaaa
tccgaaagcagcaaatcctcctctggccgccgccaaggtcgtcccggccaatccaatagt
ggccgtggccaaggtggtcgtggccgtcgccagtccaaccgcccggaagcggctcaggaa
gaaaaagccagcacggaaaacaccggcagtaatacccgtggtcgccgccgtaacgcctca
gcaggtaacgaatctgctctggaaactccacaaagcgccaacaccacgcccgccactgcc
gacgaaggcagcagcaacagccgcaacccacgtaaccgccgtggccgtggccgtcaacgc
cgtgaagaaggcagcacagaaaacgtcgagctgaacaaagacgtcgccagcactgaagcc
cagcacgaacaggctgctgccgcagtggccagcgtcgccgtagtggctgccgtggccgcc
accaagcaagaagcgcaaacccgcgctgaacagctggccgaggccgacagcgctgatacc
agcgacaactcggatgccgaaaccgacgagaacagcgaaaacggcgctctggacccagaa
cgcaaacgtcgccgtcgtcgtagccgtcgtggtcgtcgtaacaccgacgccaacgccgta
gccgagaacgaagagaacaacgaagaaggcaataccagcgcctacgttgctcacgaaaca
cctagcttcaaccccgctgccctggatgcccaggaacaagctgccgcccaaaccgcagca
gccgagcctgaacagccccaagcagccgtagaagcaccagcagcccaagaagccgctcct
gtcgccgtagaggcctctcaagaagctcctgccgctaccccagctgcacagcaaactgaa
gaagtcgctacaacccaggtaagcgctgttgaaaccgctccagcccaggaagaagtagcc
actccagccgttcaggccgaagttgctccagaagctcctgccgcagaagaaaccgttgct
cctgtgcaagcagaagctgccgccgaacctgccaaagcagaagtgaccgaagctcaagct
gaagctgtagaaacagccgcagcgcccgcagaaacgcaagccgcagcagaaaccccagcc
gttgaagccgctccagtggaaactgcagccgtagaaaccgctactgcccaggaagaagtt
gctgctccagccgctcaggccgaggtagcgccagaagctcctgccgctgaagaagctgtt
gctcctgcgcaagcagaagttgctgccgaaccagccaaagcagaagccaccgaagctcaa
gctgaagccgtggagacaactgctactcccgcagaagcacaacctgcagttgaagccccg
gccgttgaagccactccagtggaaaccacagccgtagagactcgcgttgagactcaaacg
actgcagctgcaaaagcccctgctgccgaacaagcacagaagcccacagccgcccctctg
gaagccgtactgaacgcagcgggcatcgaactagtggaaaccgttcgctcggcaacacag
gacgactaccagcccgcaccagtgcgcctgggtcgcccacgcaagcaacgtgctgcagaa
accgagaacagcgagccgctgcaacaggttgaaacgcagtaa
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