Alcaligenes sp. NLF5-7: MID00_15445
Help
Entry
MID00_15445 CDS
T10407
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MID00_15445 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alcn03021
]
MID00_15445 (rho)
03019 Messenger RNA biogenesis [BR:
alcn03019
]
MID00_15445 (rho)
Transcription machinery [BR:
alcn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MID00_15445 (rho)
Messenger RNA biogenesis [BR:
alcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MID00_15445 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
UTM00883
LinkDB
All DBs
Position
complement(3354137..3355393)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLEMAATLEIDNANRLRKQELMFAIMKKHAKKGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GMQPEAIKHRIMFENLTPLHPDQPMRLERDIKSEENITGRILDIFSPIGKGQRALIVASP
KSGKTVMMQHMAHAITTNYPEAIMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNSEIHLERRLAEKRIYPAINL
NKSGTRREELLIKPDLLQKVWVLRKFIHGMDEIEAMEFILDKIRATKTNSEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgaacgaattaaaagctctgcacgtctcgcagctgctagaaatggctgccact
ctggaaatcgacaacgcgaaccgcttgcgcaagcaagagctgatgttcgccatcatgaaa
aagcacgccaaaaagggcgagcagattttcggcgacggggtgcttgaagtcctgcctgat
ggttttggctttctgcgttcgccagaaacctcttacctggccagcacagacgatatctat
atctccccttcgcagatacgtcgtttcaatctgcacacgggtgactccattgaaggtgaa
gtgcgcacccctaaagacggcgagcgctactttgccctggtaaaagttgataaggttaac
ggcatgcagcccgaggccatcaaacatcgcatcatgtttgagaacctgacgccgctgcac
ccggaccagcccatgcgcctggagcgcgacatcaaaagcgaagagaacatcacaggccgt
atcctggatatcttctcgcctatcggtaaaggccagcgcgccctgatcgtggccagcccc
aaatccggtaaaaccgtgatgatgcagcacatggctcacgccatcacgaccaattacccc
gaggccatcatgatcgtcctgctagtggacgagcgccccgaggaagtaaccgaaatgcag
cgcaccgtgcgcggcgaagtggtggcctccacctttgacgaacccgccacacgtcacgtg
caagtggccgagatggtcattgaaaaggccaaacgcctggttgaattgaaaaaagacgtg
gtgatcctgctggactccattacccgtctggcacgcgcctacaacaccgtggtccctgct
tcgggcaaggttttgaccggtggtgtggacgccaacgccctgcagcgccccaaacgcttt
tttggcgctgcccgtaatctggaagaaggtggctccttgaccatcatcggtactgccctg
attgaaaccggcagccgcatggacgaagtcatctatgaagaatttaaaggtaccggcaac
tccgaaatccatctggagcgccgtctggccgagaaacgtatttacccagccatcaacctg
aacaaatcaggcacacgtcgtgaagagttgctgatcaagcccgaccttctacaaaaggtc
tgggttctgcgcaagttcatccatgggatggatgaaattgaagccatggagtttatcctg
gacaaaatccgggccacaaagaccaactccgaattcttcgacatgatgaagaagtaa
DBGET
integrated database retrieval system
