Alcaligenes sp. NLF5-7: MID00_19515
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Entry
MID00_19515 CDS
T10407
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03410
Base excision repair
alcn03430
Mismatch repair
alcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MID00_19515 (recJ)
03430 Mismatch repair
MID00_19515 (recJ)
03440 Homologous recombination
MID00_19515 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alcn03400
]
MID00_19515 (recJ)
DNA repair and recombination proteins [BR:
alcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MID00_19515 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MID00_19515 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MID00_19515 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
VRP3
Motif
Other DBs
NCBI-ProteinID:
UTM01646
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Position
4225011..4226720
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AA seq
569 aa
AA seq
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MVTPILKNRPVQEAASHALKQAGIHDLMARLLASRGVTDAAQIDPAWRNMIPPNMLTQAR
EAAVLLADAIARRDRMLIIADYDCDGATACAVGLRALRSMGAVVDFLVPNRFETGYGLSP
AVVELAEQHPSGKPDLLITVDNGIASIDGVEAAHMAGMKVLVTDHHLPGDELPDALAIVN
PNQPGCEFPSKNLAGVGVIFYLMLALRAELRQRGVYEANAGPRLNELADLVALGTVADVV
SLDANNRLIVTQGLERMRKGQMQAGLRALFQVAGRDPRQASAFDLGFALGPRINAAGRLA
DMALGIRCLITDDEDEAANLARELEDMNQDRRSIEQSMREEALRAAELAEPDTSATVCVF
HPEWHQGVVGLVASRLKEKYWRPTLAFAQGDEGEIKGSGRSIPDVHLRDALDLVSKRYPG
LILKFGGHAMAAGLTIEEDNYDVFVQAFEEAVQELTGRYQFDPVIETDGSLEPEHINITV
ASLLQKQVWGAGFPAPVFRDKFFVRQQRLLKNKHLKLSLERNGEYFDAIWFNRDTLLPEN
IEAAYRLDQNEWNGNVSVQFIIEYAQGQD
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
gtggtcacccctatcctgaaaaaccgtcccgttcaagaagccgccagccacgccctgaaa
caggccgggattcacgatttaatggcccgcctgctggcctctcggggtgtgaccgatgcc
gcccagatcgatccggcctggcgcaacatgattccgcccaatatgctgacccaggcgcgt
gaagccgccgtcttgctggccgatgccattgcccgccgggaccgcatgctgatcattgcc
gactacgactgtgacggcgctaccgcctgtgcagtcggcctgcgcgcgctgcgcagcatg
ggcgcagtcgtggactttctggttccgaaccgctttgaaaccggctatggcctgtcgccc
gccgtggtcgaactggctgagcaacatccctcgggcaaaccggatctgctgattaccgtg
gataacggcattgccagtattgatggtgtggaagccgctcatatggcgggcatgaaagtt
ctggtcacagaccaccacctgcccggcgatgagttgcccgatgccctggcgattgtgaac
cccaatcagcccggctgtgagttcccctccaagaacctggccggtgtgggcgttattttt
tacctgatgctggctttgcgtgccgagctgcgtcagcgcggggtatatgaggccaatgca
ggcccacgcctgaacgaactggccgatctggtcgccctggggaccgtggccgacgtagtc
agcctggatgccaataaccgcctgatcgtcacccaagggctggagcgcatgcgcaagggc
cagatgcaggctgggctgcgcgccctgttccaggttgctggccgtgacccgcggcaggcc
agcgcctttgatctgggctttgccctggggccacgcatcaacgccgccggtcgactggcc
gatatggccttgggcatacgctgcctgatcacggatgacgaagacgaggccgctaatttg
gctcgcgaactggaggacatgaaccaggatcgccgctcgattgagcagtccatgcgcgaa
gaggccctgcgcgcagccgaactagccgaaccggacaccagcgccactgtgtgcgtgttc
caccccgaatggcaccagggcgtggtcggcctggtcgcctcgcgtttgaaagaaaagtac
tggcgccctaccctggcgtttgcccagggtgacgaaggcgagatcaaaggttcgggccgc
tccatccccgacgtacacctgcgcgatgcgctggatttggtctccaaacgctatcccggt
ctgattctgaagtttggtggccacgccatggcggccggcctgacgattgaagaggacaat
tacgatgtgtttgtgcaggcctttgaagaggccgtacaggaactgaccggccgctatcag
tttgatcccgtcattgaaaccgacggttcgctggaacctgagcacatcaatatcaccgtc
gctagcttgctgcaaaaacaggtctggggcgcagggtttccagcccccgtgtttcgtgac
aagttctttgtacgccagcagcgtttgctgaagaacaagcacttgaagctaagcctggag
cgtaacggcgaatacttcgatgcgatctggttcaaccgcgataccttgctgccggaaaat
atcgaagccgcctatcgcctggatcagaacgaatggaacgggaacgtcagcgtgcaattt
attattgaatatgcacaggggcaggattaa
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