Alistipes sp. dk3624: GFH31_04525
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Entry
GFH31_04525 CDS
T06260
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ald
Alistipes sp. dk3624
Pathway
ald03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ald00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFH31_04525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ald03019
]
GFH31_04525
03009 Ribosome biogenesis [BR:
ald03009
]
GFH31_04525
Enzymes [BR:
ald01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GFH31_04525
Messenger RNA biogenesis [BR:
ald03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GFH31_04525
Ribosome biogenesis [BR:
ald03009
]
Prokaryotic type
rRNA helicases
GFH31_04525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGA23161
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All DBs
Position
1070001..1071824
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AA seq
607 aa
AA seq
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MVQLEEFGALGLTDVTLEAIKAKGFETPSPIQKLTIPVLLDDEKTNDIIAQAQTGTGKTA
AFGLPILERLRPQKGATQALILVPTRELALQVTEEILSFNAKRKLVISPIYGGASMTEQL
RRLGKGIDVVVGTPGRILDHLRRGTLDIKALKYLILDEADEMLNMGFIEDVEEILSNTND
YRRILLFSATMPERIIRLSKKYMRDVEILRVPAQEVTTELTDQIYFEVRDSDKFDALTRI
IDVEPEFYGIVFCRTKIGVDEVVNKLTERGYAAEGLHGDVSQVQREKILKRFKKKLANIL
VATDVAARGIDINNLTHVINYSLPQDTESYVHRIGRTGRAGNTGTAITFISHSEYRQFSS
LKREIKVDIKKVALPSAQDVVEIKKTKIKDDLIEIVESESYRKYTEMAGEVLQNLDPEVA
LAALLKLAFKNELEESSYPEIRSINVDRKGTARLFISIGKMDGFDARKLTDMLKRECRLP
DNKIDDVRVMDSYSFVTVPFSDARQAIRQLNDINRGGRPIAELAKDGDSGENRERSGRDF
RKEKRKGARKEDRKTERRDAARKSGGNPRKNDFDWNNVQWDAVNPAAGWGGKAGFDKRAG
GKKRGKR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggttcaattagaagaattcggagcgctcggactgaccgatgtcaccctcgaagccatt
aaagcgaaaggcttcgaaaccccgtctccgatccagaaactcacgatccccgttctgctc
gacgacgaaaaaacaaacgatatcatcgcacaggcccagaccggcaccggtaaaaccgcc
gctttcggcctgccaatcctcgaacgactgcgcccgcagaaaggagcgacccaagcgctg
attctggttcccacccgcgaactggccctgcaggttaccgaagaaatcctatcgttcaac
gccaaacgcaaactcgtcatttcgccgatctacggaggagcttcgatgaccgaacaactg
cggcgtctgggcaaaggcatcgatgtcgtagtcggcacgcccggccgcatcctcgaccac
ctgcgtcgcggaacactggacatcaaggccctgaaatacctgatcctcgacgaagcggac
gaaatgctcaatatgggctttatcgaagacgtcgaagaaatcttgtccaatacgaacgac
taccgccgcatcctgctgttttcggcgaccatgcccgaacggatcatccgcctgtcgaaa
aaatacatgcgcgacgtggaaatcctgcgcgtaccggcacaagaagtcaccaccgaactg
accgaccagatctacttcgaagtgcgcgacagcgacaaattcgacgcgctgacgcgaatc
atcgacgtcgaacccgaattttacgggatcgtcttctgccgcaccaagatcggcgtggac
gaagtggtcaacaagctgaccgaacgcgggtatgcggccgaaggactgcacggcgacgtt
tcgcaggtacaacgcgaaaaaatcctgaaacgattcaagaaaaagctggccaatatactg
gtagccaccgacgtggcggcgcgcgggatcgacatcaacaacctgacccacgtgatcaat
tattcgctgccgcaggacactgaatcctacgtgcatcggatcggccgcacgggccgcgcc
ggcaataccggtacggcgatcacgttcatctcgcattcggaataccggcagttcagttcg
ctgaaacgggaaatcaaagtggacatcaagaaagtcgccctgccgtcggcgcaggatgtc
gtcgagatcaaaaagaccaagatcaaggacgacctgatcgaaatcgtcgaaagcgagtcg
taccgcaaatataccgaaatggccggcgaggtgctgcaaaacctcgacccggaagtggcg
ctggcggccctgctgaaactggcgttcaaaaacgaactcgaagagagcagctaccccgaa
atccgttcgatcaacgtcgaccgcaaaggaacggcgcggctgttcatctcgatcggcaaa
atggacggtttcgacgcccgcaaactgaccgacatgctgaaacgcgagtgtcggctgccg
gacaacaagatcgacgacgtacgggtgatggatagctattcgttcgtaaccgtgccgttc
tcggacgcccggcaggcgatccgccagctcaacgacatcaaccgcggaggacgcccgatc
gcggaactcgccaaagacggcgattccggcgaaaacagggaacgttcgggacgggacttc
cggaaagagaagcgcaaaggcgcgcggaaagaggatcggaaaacggaacgcagggacgcc
gcccgcaaatccggcggaaatccgagaaaaaacgacttcgactggaacaacgtccagtgg
gatgcggtcaatccggcagccggctggggcggcaaagcgggcttcgacaaacgggccggc
ggtaagaaacgcggcaaacggtaa
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