Alistipes sp. dk3624: GFH31_08615
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Entry
GFH31_08615 CDS
T06260
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ald
Alistipes sp. dk3624
Pathway
ald03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GFH31_08615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ald03400
]
GFH31_08615 (mfd)
Enzymes [BR:
ald01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFH31_08615 (mfd)
DNA repair and recombination proteins [BR:
ald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GFH31_08615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
Cas3-like_C_2
UB2H
AroM
DUF3310
Motif
Other DBs
NCBI-ProteinID:
QGA23884
LinkDB
All DBs
Position
complement(2027069..2030419)
Genome browser
AA seq
1116 aa
AA seq
DB search
MTTDELLQLFTGEKAYRQLAAEIRPGRSVGLASLAGSSLSLVAAAAVRQTGGLHVFVMED
RDAAGYLYNDLFPLLGEERLLFFPTGYKRSIQFGQEDPSGIVQRTAALNAVKNNDGGALA
LCTYPEALAEKVVGQQQLRESILTLRRGDRLSTAFVEEILTTNRFERVDFVYEPGQYSVR
GGIIDIFSFSSNVPYRIDFFGDEIDSIRPFDISTQLSTGKLAEVEIVPNLKDIANASARV
SFATFAGQAVYWIADGEYTLKRFNDIRTKILGDLENPSEIDRMVTSRKEFLENSGKATFI
LLNDNITERAADVRIAFNTSPQPQFNKNFELLAEDITRNRENGYETFFLTENKAQLERLG
NIFNSIGAKQVRFGSVPLTLHAGFIDHISQKCFYTDHQIFDRYQRYRIRGELDRSESLTI
QELNSLKVGDYVVHIDHGVGRFGGLTRTVENGKVHEAIKLVYRDNDVLLVNVHALHRISK
YKDKESEPPKIYKLGSGAWQRMKLNTKKAVKDIARELIALYAKRKASEGFAYSPDSYLQH
ELEASFIYEDTPDQQTATQLVKQDMESRTPMDRLICGDVGFGKTEIAIRAAFKAVTDSKQ
VAVLVPTTILALQHYRTFNDRLKEFPVRIEHLSRVKSAKEVRQIADDLAAGKIDILVGTH
KLLGKSIEFKDLGLLIIDEEQKFGVAAKEKLRHLKANIDTLTMTATPIPRTLQFSLMGSR
DLSVISTPPPNRQPIATESHLFDEEIIREAIGYELSRNGQVYFVHNRVETIGNIERLVRK
LCPEARVGVGHGQMNPQQLEQLMMDFIYGEFDVLVATSIIESGVDVPNANTIIIDNAQNF
GLSDLHQLRGRVGRSNRKAFCYLLTPPDEMLSSDARRRLRAIEEFSDLGAGFNIAMQDLD
IRGAGNLLGGEQSGFIADIGFETYQKILNEAIAELREEEFAKTGETPGETAPPQPATYIS
DTQIDTDREAFIPDAYISSSAEKIRLYRELDHITDDRRLALFEKNLIDRFGPVPEATREL
FDIVRMRWVCIELGFEKAIVKNGIMILKFIENQHSAYYKSTVFGNILKIATRPDSKFIFK
QNNNKLSIVVRNIKNISEATANLCELAAKVHGEGVV
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgacgaactgctgcaactttttaccggcgaaaaagcttaccggcaactggcc
gcggagatccgtcccggccgcagcgtcggactggcttcgctggccggatcgtcgctgtcg
ctggtcgcggcagcagccgtgcggcaaaccggagggctgcacgtcttcgtcatggaagac
cgggacgcggcgggctacttgtacaacgatctgtttccgctgctgggcgaagaacgactg
ctgtttttcccgaccggctacaaacgttcgatccaattcggacaggaagatccgtcgggg
atcgtacagcgaacggcggcgctgaacgccgtaaaaaacaacgacggcggcgcgctggcg
ctctgcacctatccggaagcgctggccgaaaaagtcgtcggccagcagcagctccgcgaa
agcatcctgacgctgcgcagaggcgaccgtctctcgacggcattcgtcgaagaaatcctc
acgacgaaccgtttcgaaagggtcgatttcgtttacgaaccgggacaatactcggtacgc
ggcggaatcatcgacattttttcgttttcgtccaacgtgccgtaccgcatcgactttttc
ggcgatgagatcgactcgatccgcccgttcgacatttcgacgcaactctcgaccgggaaa
ctcgccgaagtcgaaatcgtcccgaacctgaaggacatcgccaatgcgtcggcccgcgtt
tcgttcgccacgttcgccggacaggccgtctactggatcgccgacggcgaatacacgctg
aaacgattcaacgacatccgcaccaaaatactcggcgacctcgaaaatccgtccgaaatc
gaccggatggtcaccagtcgcaaagaatttttagaaaacagcggcaaggcgaccttcatc
ctgctcaacgacaacatcaccgaacgcgccgcagacgtccggatcgccttcaatacttcg
ccgcagccgcagttcaacaagaatttcgaactgttggccgaagacatcacacgaaaccgc
gaaaacggatacgaaacttttttcctgaccgaaaataaagcccaactggaacgcctgggc
aatattttcaattcgatcggcgccaaacaggtccggttcggatcggtgccgttgacgctg
cacgccggattcatcgaccacatttcgcaaaagtgtttttataccgaccaccagatcttc
gaccgttatcagcgctatcgcatccgcggcgaactggaccgcagcgaaagtctgacgatc
caggagcttaactcgctgaaggtaggcgattacgtggtacacatcgaccacggcgtagga
cgcttcggcggactgacgcgcacggtcgaaaacggcaaggtacacgaagcgatcaagctg
gtctaccgcgacaacgacgtgctgctggtcaacgtacacgcgctgcaccgcatttcgaaa
tacaaagataaggagagcgaaccgccgaaaatctacaagctgggatcgggcgcctggcag
cggatgaagctgaacacgaaaaaggcggtcaaggacatcgcccgcgagctgatcgcgctg
tacgccaaacgcaaggcgagcgaaggtttcgcatattcgccggacagttacctgcagcac
gaactggaagcctcgttcatctacgaagatacgcccgaccagcagaccgccacgcaactg
gtcaagcaggatatggagagccgcacgccgatggatcggctgatctgcggcgacgtcggc
ttcggcaagaccgagatcgcgatccgggccgctttcaaggcagtcaccgactcgaaacag
gtcgccgtactggttccgaccacgatcctcgccttgcagcattaccgaacgttcaacgac
cggttgaaagaattccccgtgcggatcgagcacctgagccgcgtgaaaagcgcgaaagag
gtgcggcagatcgccgacgacctggccgccggcaagatcgacattctggtcggaacgcac
aaactgctcggcaaaagcatcgaattcaaggatctgggcctgctgattatcgacgaagaa
caaaaattcggcgtagcggccaaagagaaactgcgccacctgaaagccaacatcgacacg
ctgacgatgacggccaccccgatcccgcgtacgctgcaattctcgttgatgggttcgcgc
gacttgtcggtcatttcaacgccgccgccgaaccgccagccgatcgccaccgagagccac
ctgttcgacgaggagatcatccgcgaagcgatcggatacgagctctcccgcaacgggcag
gtctatttcgtccacaaccgcgtcgagacgatcggcaacatcgaacgcctcgtgaggaag
ctatgcccggaggcgcgcgttggcgtcgggcacgggcagatgaacccgcaacagctcgaa
caactgatgatggacttcatttacggggagttcgacgtgctggtagccacttcgatcatc
gaatcgggagtggacgtgccgaacgcgaacacgatcatcattgacaatgcccaaaacttc
ggcctgagcgacctgcaccaattgcgcggccgcgtcgggcggtcgaaccgcaaggcgttc
tgctacctgctgacgccgccggacgaaatgctgtcgtccgacgcacgacgcaggctgcgg
gccatcgaagagttctccgacctcggcgcgggattcaacatcgccatgcaggatctggac
atccgcggcgcaggcaacctactgggcggcgaacagagcggtttcatcgccgatatcggc
ttcgaaacctatcagaaaatcctgaacgaggcgatcgccgaactgcgcgaagaagaattc
gcgaaaaccggcgaaacgcccggcgaaacggcgccgccgcaaccggccacgtacatctcc
gacacgcagatcgacaccgaccgcgaagcctttatcccggacgcttacatcagcagttcc
gccgagaaaatccgcctgtaccgcgaactcgaccacatcacagacgaccggcggctggcc
cttttcgagaaaaatctgatcgaccgtttcggcccggttccggaagcgacccgcgagttg
ttcgacatcgttcggatgcggtgggtatgcatcgaactcgggttcgagaaagcgatcgtc
aaaaacggcatcatgatcctgaaattcatcgaaaaccagcattcggcctactacaaaagc
acggtattcggcaacatcctgaaaatcgcgacgcgccccgacagtaaatttattttcaaa
cagaacaataataagctgtctattgtagttagaaatataaaaaacatatccgaagcgact
gcgaacctttgcgaactggcagccaaagtccacggggaaggggtcgtttag
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integrated database retrieval system
