Alistipes sp. dk3624: GFH31_08620
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Entry
GFH31_08620 CDS
T06260
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
ald
Alistipes sp. dk3624
Brite
KEGG Orthology (KO) [BR:
ald00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ald03019
]
GFH31_08620
03009 Ribosome biogenesis [BR:
ald03009
]
GFH31_08620
Messenger RNA biogenesis [BR:
ald03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFH31_08620
Ribosome biogenesis [BR:
ald03009
]
Prokaryotic type
rRNA processing factors
GFH31_08620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
ATPTG10
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QGA23885
LinkDB
All DBs
Position
complement(2030428..2031972)
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AA seq
514 aa
AA seq
DB search
MNKELIINVTSNEITIALFEDKQLVELNKEKCKTGFAVGDIYLGKVKKIMPGLNAAFVNV
GYEKDAFIHYLDLGPQFTTQQKLVNILTNNKKIPNFETMRLDKAMGKNGKISGFIASGQS
ILVQIAKEAISTKGPRLTCDMSLAGRNVVLIPFSNKVSISQKIRSAEERKRLKRIASEVL
PNNYGVIIRTAAMGQQDEEIKHDILSLIERWKKVISGVRNSTAPALILNEENRTTTIIRD
LLNGSFSSICIDDQTVYEEVREYIRTIAPEKEKIVKLYKGNVPIFDNFDVSKQIMSLFSK
YVSLKKGAYLIIEHTEALHVVDVNSGNRAKVDNDQEQTAMDVNLAAAAEIARQLRLRDMG
GIIVIDFIDLHKSENRTALVEKMREMMANDRAKHTILPLSKFGLMQITRQRVRPETHIDM
RETCPACHGTGLVTPAALLDTQIEKQIAYYAKEKKLDYIKLRVNPVVAAFLTKGVFSLRL
RWMLKYRCAIRIVKNTTTGIIETRYFNRKDEELF
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaattaataatcaatgtaacctccaacgaaatcaccatcgccctgttcgaa
gacaaacagcttgtcgaactgaacaaggaaaaatgcaaaacgggatttgccgtcggcgat
atctatctgggaaaagtcaagaagatcatgcccgggttgaacgccgcgttcgtcaacgta
ggatacgaaaaagacgcattcatccactacctggatctcggccctcagttcaccacccag
cagaagctggtcaacatactgaccaacaacaagaaaatcccgaacttcgaaaccatgcgc
ctcgacaaggcgatgggcaagaacgggaaaatatccggattcatcgccagcggacaatcg
atcctggtacaaatcgccaaagaggccatctcgacgaaagggccccgtctgacctgcgac
atgtcgctcgcggggcgcaacgtcgtactgatcccgttttcgaacaaggtatccatttcg
cagaaaatccgttcggccgaagagcgcaaacggctcaagcgcatcgcatcggaagtgctg
ccgaacaactacggcgtgatcatccgcaccgcggcgatgggacagcaggacgaagagatc
aagcacgacatcctgtcgctgatcgaacgctggaaaaaagtcatatcgggcgtccgcaac
agtacggctcccgccctgatcctcaacgaagagaaccgaacgaccaccatcatacgcgat
ctgctgaacggttcgttcagcagcatttgcatcgacgaccagaccgtctacgaagaagtg
cgcgaatacattcgcacgatcgctccggaaaaggaaaaaatcgtcaagctctataaaggc
aacgttcccattttcgacaatttcgacgtatcgaaacagatcatgtcgcttttcagcaaa
tacgtctcgctgaaaaagggagcctacctgatcatcgaacataccgaagcgctacacgtg
gtggacgtcaacagcggcaaccgcgccaaagtggacaacgaccaggagcagacggccatg
gacgtcaacctggcggcggcggccgagatcgcgcggcagttgcgcctgcgggatatgggc
ggtatcatcgtgatcgacttcatcgacctgcacaaaagcgaaaaccgcacggcgctggtc
gaaaagatgcgcgagatgatggcgaacgaccgcgccaagcacaccatcctgccgctatcg
aaattcggcctgatgcagatcacccgccaacgggtgcgtcccgagacgcacatcgacatg
cgcgaaacctgcccggcctgccacggcaccggactggtcacgccggccgcgctgctcgat
acgcaaatcgaaaaacagatcgcctactacgcgaaagagaaaaaactcgactacatcaag
ctccgagtcaacccggtcgtagccgccttcctgaccaaaggggtattctcgctgcggctg
cgctggatgctgaaataccggtgcgccatccgcatcgttaaaaacacgaccaccggcatc
atcgaaacccgttatttcaaccggaaggacgaagaattgttctga
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