Alistipes sp. dk3624: GFH31_08825
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Entry
GFH31_08825 CDS
T06260
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ald
Alistipes sp. dk3624
Pathway
ald03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ald00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFH31_08825 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ald03019
]
GFH31_08825 (rnr)
03016 Transfer RNA biogenesis [BR:
ald03016
]
GFH31_08825 (rnr)
Enzymes [BR:
ald01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GFH31_08825 (rnr)
Messenger RNA biogenesis [BR:
ald03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFH31_08825 (rnr)
Transfer RNA biogenesis [BR:
ald03016
]
Prokaryotic type
tRNA degradation factors
GFH31_08825 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
RNase_II_C_S1
OB_HELZ2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
QGA23926
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Position
2081251..2083440
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AA seq
729 aa
AA seq
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MAKGKKTSGKEKGLYTDPATLIMELFRTLPDKRYSVKSLSAAAGAATREQKDQVRAIVHD
FLRQGVIRQVSEGKYSLSGSQRETVEGTVDMTSSGALYVIVEGMDKDVYVNASRAGHALH
GDRVKVAITRKGRGGNPEGEVVEVIERSPKKYVGVVERSDNFAFVHVDSRKMAHDIFIPE
RSLNGAKQGQKVLVNIVGWPDTMKSPEGEIVDVFGTPGNNNTEMHAILAEFDLPYSYPQE
VEQQAEKIPDTIDAKEIARRRDMRGVTTFTIDPADAKDFDDALSIRRLPNGNFEVGVHIA
DVTHYVHPGDMIDAEGQSRATSVYLVDRTVPMLPERLSNGLCSLRPNEEKLCFSAIFELS
PEAEVQQEWFGRTVIYSDRRFTYQEAQDVIETGRGDLSDEILLLNDLAQKLRAERFRNGS
INFERDEAKFELDENGKPLRVYFKEIKESNQLIEEFMLLANRKVAEFVGRKRKGVQNSDR
TFVYRIHDKPNTDKMAQFRSFVTRFGYQMKAQGNKAVAKEINRLMKKIHGRKEENIISTL
AIRSMAKATYSTDNIGHYGLAFDYYTHFTSPIRRYPDMMVHRLLAHYLAGGKSEDKEYYE
RLCEHSSAMEVRAADAERASIKYKMVEFMLDKLDQEFDGHISGITEWGIYVELEDTKIEG
MVALRDMTDDFYVFDEENYAVRGREHKRTFTLGDEVRIRVTRADLQRKQLDFDLVASYDF
DTKEAIRVE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggaaaaaagacctccggcaaggaaaaaggtctgtacaccgatcccgcaacg
ctgatcatggagctattccgcacgttgccggacaaacgttattcggtgaaaagtctgagt
gcggccgccggagccgcgacccgggagcagaaagatcaggtgcgcgcgatcgtgcacgac
tttctcaggcaaggagtgatccgtcaggtatccgagggaaaatacagtctcagcggttcg
cagcgcgaaacggtcgaaggaacggtcgatatgacctcttcgggcgcgctttacgtgatc
gtcgaagggatggacaaggatgtttacgtcaatgcgtcgcgcgccggacatgcgctgcac
ggcgaccgggtgaaagtggccattacgcgtaaggggcgcggcggaaatcccgaaggggag
gtcgtcgaagtgatcgagcgctcgccgaaaaagtacgtcggcgtggtcgaacgttccgat
aatttcgctttcgtgcatgtcgacagccgtaagatggcgcacgatatttttattcccgaa
cgttcgctgaacggtgcgaaacaggggcagaaagtgctggtcaacattgtcggctggccc
gatacgatgaagagtcccgaaggggagatcgtcgacgtgttcggcactccggggaacaac
aataccgaaatgcatgcgattctggccgaattcgatctgccgtacagttatccgcaagag
gtcgaacagcaggccgagaagattcccgatacgatcgatgcgaaggagatcgcccgccgg
cgcgatatgcgcggcgtgacgacctttacgatcgacccggccgatgcgaaggatttcgac
gacgcgctttcgatccggcgcctgccgaacggtaatttcgaagtcggcgtacacattgcc
gacgtgacgcactacgtgcatccgggcgatatgatcgacgccgagggacagtcccgcgcc
acgtcggtctacctggtcgaccgaacggtgccgatgctgcccgaacggttgtcgaacgga
ctgtgctcgctgcgcccgaacgaagaaaaactgtgtttctcggcgattttcgagctgagc
cccgaagccgaagtgcagcaggaatggttcgggcggacggtgatttattccgaccgccgg
ttcacttatcaggaagcgcaggacgtgatcgaaacgggacgaggcgatctgtccgacgaa
atcctgctgctgaacgacctggctcaaaagttgcgcgccgagcgtttccgcaacggttcg
atcaatttcgagcgcgacgaggcgaagttcgaactggacgagaacggcaaaccgctgcgc
gtttatttcaaggagatcaaagagtcgaaccaactgatcgaggagttcatgttgctggcc
aatcgcaaggtggccgaattcgtaggccgcaagcgcaaaggagtgcagaacagcgatcgc
acgttcgtataccggattcacgacaagcccaacaccgataaaatggcgcagttccgcagt
ttcgtaacgcggttcggctatcagatgaaggcgcagggaaacaaggccgtggcgaaggag
atcaaccggctgatgaagaaaatacacggccgtaaggaagagaacatcatttcgacgttg
gcgatccgttcgatggccaaagcgacctattcgaccgacaatatcgggcactacgggctg
gcgttcgactattatacgcattttacttcgccgatccgtcgttatccggatatgatggtg
caccgtttgctcgcgcactacctggccggcggaaagtccgaggataaggagtattacgaa
cgcctgtgcgagcattcgtcggcgatggaggtgcgtgccgccgatgccgaacgggcctcg
atcaagtacaaaatggtcgaattcatgctcgacaagctcgatcaggagttcgacggccat
atttcgggcattaccgagtggggcatttacgtcgagttggaggatacgaagatcgaaggg
atggtcgcgctgcgcgacatgaccgacgatttttacgtgttcgacgaggagaattacgcg
gttcgcgggcgcgagcacaagcggacgtttaccctgggcgacgaagtgcgcatccgcgtg
acgcgggccgatctgcaacgcaagcagctcgatttcgacctcgtggcatcgtatgatttc
gatacgaaagaggcgattcgggtcgaataa
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