Alteromonas sp. Mac1: AV939_00020
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Entry
AV939_00020 CDS
T05687
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ale
Alteromonas sp. Mac1
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ale03032
]
AV939_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
ale03400
]
AV939_00020 (gyrB)
Enzymes [BR:
ale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AV939_00020 (gyrB)
DNA replication proteins [BR:
ale03032
]
Prokaryotic type
DNA Topoisomerases
AV939_00020 (gyrB)
DNA repair and recombination proteins [BR:
ale03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AV939_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AMJ85116
LinkDB
All DBs
Position
4198..6618
Genome browser
AA seq
806 aa
AA seq
DB search
MSEQNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSE
IVVQIHTDGSVSVYDDGRGIPTSVHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSSKLKLRIRREGKTHEQEYQHGVPQAPLAVIGETDKTGTSVRFWPSSDTFTN
TLFHYDILAKRLRELSFLNSGISIRLKDERDGKEDHFMYEGGIKAFVEYLNQKKTPVHQK
VFHFTHEQEDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYME
KEGMNKKAKTNASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA
EFLLENPAESRIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS
ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI
GRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQPPLYKVK
KGKQEQYLKDDDALTAYLTSIAIDGASLHTSDDDPGISGVALEQLVTLYQSAEKMITRMK
RLMPSSILYRMIYTPTLNLEDLKDESTLANVAEHFVAQLTERENDGATYRYEIRRDIELS
EFYITIIMRMHGIDYEYVIGHDFIESTEYQRLKELNLAINDMMSSNAFIQRGDRKMPVES
FKEALDWLMTEAKRGQYIQRYKGLGEMNPSQLWETTMDPEGRRMLQVKIEDAIACDQLFT
TLMGDQVEPRRNFIEANALRVENLDV
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacagaataattacgactcgtccagtatcaaggtacttaaaggattagacgcc
gtacgaaagcgtcctggtatgtatatcggtgacacggacgatggtacaggacttcaccac
atggttttcgaggttgttgataactcgatagatgaagcattggctggacactgttcagaa
atcgttgtgcaaatacacacagatggctctgtttctgtttacgatgatggtcgcggaatt
ccaacttcagtgcatgaagaagaaggtgtttctgcagcagaagttattatgacggttctg
catgccggcggtaagttcgatgataattcttataaagtatcaggcggacttcacggtgta
ggtgtatctgtagtaaacgctctttcaagtaaattaaagctacgtattcgtcgtgaaggt
aaaactcatgaacaagaataccagcatggtgttcctcaagcacctttagccgtaattggt
gaaactgataaaacaggtacaagtgtacgtttctggccaagctcagatacttttacgaac
accttgttccactacgatattctagctaaacgcttaagagaactatctttccttaactct
ggtatttccattcgcttgaaagacgagcgtgatggaaaagaagaccatttcatgtacgaa
ggtggtattaaagctttcgttgaatacttgaaccaaaagaaaacacctgttcaccagaag
gttttccatttcactcatgaacaagaagatggtatttcagtagaagtatctatgcagtgg
aatgacggcttccaagagaatatttactgctttaccaacaacattcctcaaagagacggt
ggtactcacttagccggtttccgtggtgcgttaacgcgaacgcttaacaactacatggaa
aaggaagggatgaacaaaaaggccaagacaaacgccagtggcgacgacgcccgcgaaggt
ctaacggcagttgtatctgtaaaagtacctgatcctaaattctcttcacaaactaaagac
aagcttgtttcatcagaagtgaaatctgcagttgagtcggcaatgaatgagaagcttgca
gagttcttgcttgagaaccctgcagagagtcgaattatcgctggtaaaatcatcgatgca
gctcgagcacgtgaagctgcacgtaaagcccgtgaaatgactcgccgtaaaggtgcatta
gacttagctggtttgccaggtaaacttgctgattgtcaggaaaaagatcctgcattaagc
gaactatatatagtggaaggggactctgctggcggttcagccaagcagggacgaaaccgc
aagaaccaagctattcttccgcttaaaggtaaaatactgaacgttgagaaagcacgtttt
gacaagatgctctcttcacaagaagtggccacgctgatcactgcactaggttgtggtatt
ggacgcgatgaatataacccagaaaaactacgttatcacagcatcattatcatgaccgat
gctgatgtggatggctcgcacattcgtacattgctactgacatttttctaccgtcaaatg
ccagaaatcattgagcgtggttatatctatattgcacagccgccgctttataaagtgaaa
aaaggtaagcaagaacagtatctgaaagatgatgatgcgttaacggcatacctaacttct
atcgctattgatggcgcatctttgcatactagtgatgatgatccaggtatcagcggtgtc
gcgttagagcaattggtaacgttataccaatctgcagagaagatgattacgcgcatgaag
cgtctaatgccttcctctattctttatagaatgatttatacgcctacattgaatctagaa
gatttaaaagacgaaagcacgctagcgaacgtggctgagcactttgttgcacagcttact
gaacgtgaaaatgatggcgcaacataccgttatgaaattcgcagagacatcgagcttagc
gagttctatatcaccattattatgcgtatgcatggtatcgattacgaatacgtaattggt
cacgactttattgagtctactgaatatcagcgtcttaaagagcttaatttggcgattaac
gacatgatgagttctaatgcgtttatacaacgtggtgatcgtaaaatgcctgtagagtca
ttcaaagaagcattagattggttaatgactgaagctaaacgcggtcagtatattcagcgc
tataaagggctaggtgagatgaacccaagccagctttgggaaaccaccatggatcctgaa
ggtcgtagaatgcttcaagtgaaaattgaagatgcaatagcgtgtgatcaattgtttact
acgctaatgggcgaccaagtagaaccaagacgaaacttcattgaagctaacgcgttaaga
gtagaaaacttagacgtgtaa
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