Alteromonas sp. Mac1: AV939_01900
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Entry
AV939_01900 CDS
T05687
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ale
Alteromonas sp. Mac1
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ale03016
]
AV939_01900
Enzymes [BR:
ale01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AV939_01900
Transfer RNA biogenesis [BR:
ale03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AV939_01900
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AMJ85441
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All DBs
Position
complement(468389..469057)
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AA seq
222 aa
AA seq
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MRCFIGLDLHSTEKLALDSWRQQALPEVTARNMFTLSEGRAQNEGRGKKGKESKGKRRDA
GASQPYAVNAANYHMTLSFLGHITHRQHEALVAELDTLVHSPFSLTLDTTGIWNGPKILF
AAPESPPAELMALAKSTRKAARAAAIEVDGKGFAPHVTVIRKATVALPVPLYTPHVEMHA
SAFHLFESVSTPQGVTYPIRQSWNLRHNMSVREKLRRGINDE
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgtttcattggtttagatttacattcaacagaaaagttagccctcgatagttgg
cggcaacaagccctcccagaggtgacagcccgcaacatgttcactctttctgagggccga
gcccaaaatgaaggtagaggaaaaaaaggtaaagagagcaaaggtaaaaggcgtgacgca
ggcgcatcccaaccttatgcggtaaacgcagccaattaccatatgaccttaagttttctt
ggccatattactcaccgtcagcatgaggcgttagtcgctgaactcgatacgctagtacat
tcgccattctccctaacgttagacactaccggtatttggaacggcccaaagattctcttc
gccgcaccagagtcaccgccagcagaacttatggcattagctaaatcgactcgtaaagcc
gcgagagccgcggcaatagaggtagatggcaaagggtttgcgccccatgtcactgttatt
cgaaaagccacggtggcgctacctgtacctttgtatacaccacatgtagagatgcacgcc
tcggcatttcacctgttcgaatctgtctcaaccccccaaggggttacgtaccccattagg
caaagttggaatttaaggcacaatatgtcggtgcgtgaaaagctacgccgaggaattaat
gatgagtag
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