Alteromonas sp. Mac1: AV939_04520
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Entry
AV939_04520 CDS
T05687
Name
(GenBank) hypothetical protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ale
Alteromonas sp. Mac1
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ale03400
]
AV939_04520
DNA repair and recombination proteins [BR:
ale03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AV939_04520
Archaeal homologous recombinant proteins
AV939_04520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
cobW
AAA_22
nSTAND3
NTPase_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AMJ85911
LinkDB
All DBs
Position
1082233..1085904
Genome browser
AA seq
1223 aa
AA seq
DB search
MKILTLRLKNLNALKGEWKIDFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGTISATSNDIMTRGTSECLAEVEFDIKGKAYRAFWSMRRARGKADGNLQSADVELAEVE
SGKVLATQVRPKSEEIERLTGLNFARFTKSMMLSQGDFAAFLNANEGDRAELLEELTGTE
IYGQLSQAIHEKYKAAETTKREFKLKLEGVALLSEAQHNELSAQLDQFKTQLLTINTEIV
SLQEQHRWQQACEQNQHELTKANAALVEANSVYEQAKDELALLVAGEPAELLRLPHSALS
QLCEDVQRIAKNLTLKQQQLPDLESQQQTRQAEFENSETNFATAKAHQQRFETLINEQII
PIDTEINKLSNRIETNQQSLADAKLKQGKAQESHQAYYDELEGKKRMLDELTTYLNAHAA
NGKMAGEISGWKEKAARFSDDENTLAELTQKITTTQQLKDSAEADLTEKQHYKTNVVLLH
QQSADNVSQCEANLNQLLSNGDAASVNADITALNNNWPVLASCEQWQRLYISHTNSHADK
AKRLTTLLSSIETLKQERAELAASYKATQSHLKDVESLIKLDAELAHLRQALSPGDACPL
CGATEHDASLMNIDVPETIAKRDELTRTLENIEKLGTQKREQISTAEFEKQQCEKVVAEA
KTAFSQLEADWQQAMLTLNARVEISDVESFNQLQLSCKERQSRLSAQLSNIQASETKLAD
AKNDTLLHQQQIDSINSEIALLTAKTSQLEGQLHDLNNTKSNVESALVNNRRTLINEIER
VGLTPDANITKWLTQKHNDVEAFQEKTHLHNSLSHELKALESKLVELSEAKASADKETQL
YSTRIQETEAKREVLLTKRHALFPEADIGAARREIQNTLSAKEQIFKKCDTHLREAQRAL
ENATAQLKVLTVELEEKQQDKQVKQVAFDTALQQSPFADETEFLNALLPYEERQRLLQKK
QLIEREQQNAQLLLDNVTQKHNTLLAHERASEWQQSTVEATQVSLNQKGEEKDRLLAQQG
QLFQQLESNRQAVEKQQSLINEMREFETSYDDIAYLHSLIGSASGDKFRRFAQGLTLDNL
VRLANQQLDRLHGRYQLTRNTKDSLGLSVLDTWQGDVVRDTKTLSGGESFLVSLALALAL
SDLVSFKTSIDSLFLDEGFGTLDAETLDVALDALDNLNASGKMIGVISHIEAMKERIPTQ
LKVIKRNGVGLSALEKCYSATEI
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttaccctcaggcttaaaaatttaaatgccttaaaaggagagtggaagata
gatttcacccaatctcctttcatcgacaacggcttgtttgccattaccggtcctactgga
gcgggtaaaacaacgttgcttgatgctatttgtttggcgctctatcaccaaacgccacgc
ttgggcactatttcggccacctcgaacgatattatgactcgcggcacgtcagagtgcttg
gcagaagttgagttcgatataaagggcaaagcgtatcgcgcattttggagtatgcggcgc
gctagaggaaaagctgacggcaatttgcaatctgccgatgtggaattagcagaagtagaa
tctggtaaagtattggccactcaggtgagacctaagagcgaagagatagagcgccttact
gggcttaactttgcgcgctttacaaaatcgatgatgctatctcaaggtgatttcgctgcc
tttttaaatgcaaacgaaggcgacagggctgaattactagaagagcttaccggcactgag
atttatggccagttatctcaagcaattcacgagaaatataaagcagcagaaacgacaaaa
cgggaattcaagctaaagctagagggcgtagcgttgctcagtgaagcgcagcataatgaa
cttagtgcgcagctggaccaattcaaaacccagctcctcactataaatactgagattgtc
tcgcttcaagagcaacatcgatggcaacaggcgtgtgagcaaaatcaacatgagctgact
aaggctaacgcggcattagttgaagcgaatagcgtttatgaacaggcgaaagacgaatta
gcgctattagtggccggcgagccagctgaattacttcgtttgcctcattctgcgcttagt
cagctttgcgaagatgtgcaacgtattgccaaaaatctcaccttgaaacagcagcaatta
cctgacttggaaagccagcagcaaacccggcaggccgaatttgaaaacagcgaaacgaac
tttgcgactgcgaaagcccaccaacagcgttttgaaaccttgatcaacgaacaaatcatt
cctattgatactgaaatcaataagctttctaatcgtatagagacaaaccagcagtcatta
gcggatgcgaaattaaagcagggcaaggcgcaagaaagtcatcaagcatactatgatgaa
cttgaaggtaaaaagcgcatgctagatgagctaaccacctaccttaatgctcatgcggca
aatggtaaaatggcaggtgaaatcagtggttggaaagaaaaagccgcccgttttagcgat
gacgaaaatacccttgcagaattaacccaaaaaataacaacaacgcagcagcttaaagac
agcgctgaggctgacttaactgagaaacaacactacaaaacgaatgtggtgttgttacat
caacaaagcgcagataacgtttcacagtgtgaggctaacctcaatcaactacttagcaat
ggcgacgcggccagtgttaatgcagatataactgcgctcaataacaactggcctgttctt
gcttcttgcgaacaatggcagcggctttatatcagtcatacaaatagccatgcagacaaa
gccaaaagactaaccaccttgttatcaagtattgaaacccttaaacaagagcgagcagag
ttagcggcaagttataaagcaacgcaaagtcatttaaaagacgttgagtcgttaatcaag
ctagatgctgagcttgctcatttgcgtcaagcgctctcgccaggcgatgcgtgccccttg
tgcggtgcaactgaacacgatgcttctttaatgaatatcgatgtgcccgaaactattgct
aagcgcgacgagttaacccgaacacttgagaatattgaaaagttgggtacgcaaaagcga
gagcaaatcagtaccgcagagttcgaaaaacagcagtgcgagaaggtggttgcagaggca
aaaactgccttttctcaactagaagccgactggcaacaggctatgttaacgttaaatgcg
agggttgaaatttcagatgttgagtcatttaaccagcttcaacttagctgcaaagaacgt
caatctcgtttaagcgcacagcttagtaatatacaagctagcgagactaaattggccgat
gctaaaaacgatacgcttttgcatcaacagcaaatagactctattaacagtgagatagcg
cttttaacagcaaaaacatcgcagctggaagggcagctacacgacttaaacaatacaaaa
tctaatgttgaaagtgcacttgtcaataaccgtcgcacacttattaacgagattgaaagg
gtggggttaacaccggatgcaaacataactaagtggcttactcaaaagcacaacgatgtg
gaagcgtttcaagagaaaacccatttacacaatagtttgtctcacgagttaaaagccctt
gaaagcaaattggttgagctaagcgaagctaaagcgtctgcggataaagaaacccagcta
tacagcacgcgtattcaagagactgaagcgaagcgagaagtgctgcttactaaacgtcat
gctttattccccgaagcagatatcggcgccgctagacgtgaaattcaaaacaccctctcg
gcaaaagagcagatatttaaaaaatgtgatactcaccttcgtgaggcgcaacgagcgtta
gaaaatgctaccgcccagttaaaagtacttactgtagaattagaagagaagcaacaagac
aaacaagtgaaacaagtcgccttcgataccgcattgcagcaaagcccatttgctgatgaa
accgagtttttaaatgcattattaccctatgaggagcgccagcgtttacttcaaaagaaa
cagttgattgagcgagagcagcagaatgcgcagttgttactggataacgtcacgcagaag
cacaacactctattagcacacgaacgcgcctctgaatggcaacaatcgactgttgaagcc
actcaggtcagcttgaatcaaaaaggtgaggaaaaagatcggttacttgcacaacaaggc
caactatttcaacaattagagagtaataggcaggcggttgaaaaacagcaaagtttaatc
aatgaaatgcgtgaatttgaaacttcgtatgatgatattgcttatctacactcgcttatt
ggttcagccagtggagataaatttaggcgatttgcgcaaggtctaacgctagataatttg
gttcgacttgccaatcaacagctcgataggttgcacgggcggtatcaacttacccgcaac
acaaaagacagtttaggtttaagtgtattagatacgtggcagggtgatgtggtgcgagat
actaaaacgctatcagggggcgaaagttttctggtgagtttagcgctagcgctggcactg
tctgatttagtgagctttaaaacaagcatagattctcttttcctcgatgaaggttttggt
acgctagatgccgaaaccctagacgtagcgttagatgcattagataacctaaatgctagc
ggtaaaatgattggtgttattagccacatagaagcaatgaaagaacgtattcctacccag
ctgaaagtcataaaacgaaatggagtagggttaagtgcgctggaaaaatgttactcagcg
acagaaatttga
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