Alteromonas sp. Mac1: AV939_07055
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Entry
AV939_07055 CDS
T05687
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ale
Alteromonas sp. Mac1
Pathway
ale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV939_07055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ale03019
]
AV939_07055
03009 Ribosome biogenesis [BR:
ale03009
]
AV939_07055
Enzymes [BR:
ale01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AV939_07055
Messenger RNA biogenesis [BR:
ale03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AV939_07055
Ribosome biogenesis [BR:
ale03009
]
Prokaryotic type
rRNA processing factors
AV939_07055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMJ88776
LinkDB
All DBs
Position
1663794..1667084
Genome browser
AA seq
1096 aa
AA seq
DB search
MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEIARTYFPKGYRFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLA
GSYLVLMPNNPRAGGISRRIEGDERTELKESLNKLDLPDGMGLIVRTAGVGKSYEELEWD
LKVLLTHWEAISKVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQH
IQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMK
DAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGDSAHHVCPRCSGHGTIRGTESLALSIL
RILEEESIKENTGQIEAQLPVSVATYLLNEKRKAIQSLEKRHGVNLLLIPNANLETPHYQ
VTRRRPDDILDDASYEVELMPTVETETETTTSAPVKREEPALKGLVAPTAAPVVAPKAEA
PEAKAESSPSLFARIGKWLGDVLGGEDEKAKAEAEAKEKEKQKQSEGRNNRGGNQSRNRN
GDDRRRKPRKNTRRNQPQNKDGEQEQRTPRSEQDDKPRASNNKGRKPRKPRDETQKLKQE
QSRDNTQDEAPKTQDNKSQDAKPQEAQKKQEVAERRKRRDTRRSVRVKKDDNTQSNEAPA
SKPVKSLAVEKPKPAKAAPAETEEVNTAPVQSTDAPAASESAAPVAQASQPAEVKSTTEQ
DAQSSSEQANNDTDENGQKRESRGRSRRSPRHVRAAGQRRKKEAQQSNDDNSAPVDEQST
ANVDTTPSQEAPAADVSKSAPRAEDTQAAMPGKLEADTAHTQNENAQPATVDTAAENAEA
PTVAKTEDTQATKPGVLAPSEEKAAPATTETATAKPEAPKTETASEVVQDEMQFELASPK
SEADAPKPAKAEVTPAPAAEAAPKQVEINLGDDSAKAASETKTKPVPKANLKKAKAAVTK
PITTGAPASSRGRINASAPMAAPASVDDTFNDVALTAKSDDSRPAIVVSGRSAAIAKASA
AASAPTTLPTSVDENA
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgcaactcaattagaagagttgcgtgttgcccttgttgatgggcagcgg
ttatacgatttggacatcgaaagtcctgggcacgaacagaaaaaagcaaacatttacaaa
ggtaaaataacccgcgttgagccaagcctcgaagcggcattcgtagactacggcgcagat
cgccacggtttcctacctcttaaagaaatcgctcgcacttacttccccaaaggctatcgt
ttcgaaggccgcccaaacatcaaagatgtcattaaggaaggccaagaagttatcattcag
attgataaagaagaacgtggtcaaaaaggcgcagcgcttaccactttcctatcactggct
ggtagctacttagtattaatgccaaacaaccctcgtgccggcggtatttctcgtcgtatc
gaaggtgatgagcgtacagaacttaaggaatctttgaacaaactagacctgcctgatggc
atgggcttaattgttcgtaccgcaggcgtagggaaatcttacgaagaattagagtgggac
ttaaaagtactacttacccattgggaagcaatttctaaagtggctgaagagcgtgaagcg
cccttcttaattcaccaagaaagtaacgtaattgtacgtgcaattcgtgactatctacgt
cgcgatattggtgaaatcttaatagataaaacaagcatctacgaacaagcattgcagcac
atccaacttgtgcgccctgactttgccaaccgcgtgaagctttatcgtggcgaagtacct
ttgttcagtcattatcaaattgagagccaaattgagtcggccttccaacgtgaagttcgc
ttaccttctggtggttcaattgttatcgaccctactgaagcacttacctctattgatatc
aactctgcccgtgcaacaaaaggcggtgatattgaagaaacagcactaaatacgaacctt
gaagcagctgacgaaattgctcgtcaacttcgtttacgcgacttaggtggcttggttgtt
atcgactttatcgatatgaccccagtacgtcaccaacgtgaagttgaaaaccgcatgaaa
gacgcggttcgcagcgatcgcgctcgcgttcagctaggccgtatctctcgctttggcttg
ctggaaatgtcacgtcagcgtttacgcccatcattgggtgattcagcgcaccatgtgtgc
cctcgctgttcaggtcacggcaccattcgtggtaccgagtcattagcactgtctattttg
cgtattcttgaagaagaaagcattaaagaaaacacaggccaaattgaagcacagcttcct
gtatcagtagcaacctatttgcttaacgaaaagcgtaaagcgattcaaagcttagaaaag
cgtcatggcgttaacttattgcttatccctaacgccaaccttgaaacacctcactaccaa
gtaacacgccgccgtccagatgatattctagatgatgcaagctacgaagtagagttgatg
ccaacggttgaaacggaaactgaaaccacaacttcagcgccggttaaacgtgaagagcca
gcattaaaagggctagttgctcctaccgctgcgccagttgttgcacctaaagcagaagca
cctgaagctaaagctgaaagctcaccctcactctttgcccgcattggtaaatggttaggt
gatgtacttggcggtgaagacgaaaaagcaaaggcagaagctgaagcgaaagaaaaagaa
aagcagaagcaatctgaaggtcgcaacaaccgtggcggcaatcagtctcgcaaccgcaat
ggcgatgatcgtcgtcgtaaaccaagaaagaacactcgtcgtaaccagcctcaaaacaaa
gatggtgaacaagaacagcgtacgccacgttctgagcaagacgacaagccacgcgcgagt
aataacaaaggccgtaagcctcgtaaacctcgtgacgagactcagaaacttaagcaagag
caaagtagagataacacccaagacgaagcgcctaagacacaagataacaagtctcaagat
gctaagcctcaagaagcgcagaagaaacaagaagtggctgagcgccgcaaacgcagagat
actcgtcgcagcgtacgtgtgaaaaaagatgacaatactcagtcaaatgaagcaccggct
agcaaaccagttaaatctcttgccgttgagaaacctaaacctgctaaagcagcgcctgct
gaaactgaagaagttaatactgcgccagttcaatcaactgatgcaccagcagcttctgaa
tcagcagcaccagtagcgcaagcctctcaaccagctgaagttaagtcgaccactgaacaa
gatgctcaatcttcttcagagcaagcgaacaacgacactgatgaaaatggtcaaaaacgc
gaaagccgtggccgttcacgtcgttctcctcgtcatgttcgtgctgctggtcagcgccgt
aagaaggaagcgcagcagtctaatgatgacaacagcgctccggtagatgaacagtcaact
gcaaacgttgacactacgccttcacaagaagcacctgctgccgacgtgagtaaatcagca
cctcgtgcagaagatactcaagcggcaatgccaggtaaacttgaggcagatactgcgcat
actcaaaacgagaatgcccagccagctactgttgataccgctgccgaaaatgctgaagcg
cctactgttgctaagacagaagacactcaagccactaagcctggtgtattagccccatcg
gaagaaaaggcagcgcctgcgacaacagaaactgcaaccgctaagccagaagccccaaaa
actgaaacagcatctgaagtcgttcaagacgaaatgcagttcgagctagcttcgccaaaa
agtgaagcggatgcgcctaagccagctaaagctgaagttactcctgcacctgccgccgaa
gctgcacctaaacaggttgaaataaacctaggtgacgattcggctaaagcagcaagtgaa
actaaaactaagcctgtgccaaaagcgaaccttaagaaagcgaaagctgcggtaactaag
cctattactacaggtgcacctgctagcagccgtggccgcattaatgcatctgcgccaatg
gcagcacctgcatcggttgatgatactttcaatgacgtagcgcttaccgctaagtctgat
gatagccgcccagccattgtagtatcgggtagaagcgcagctattgcgaaagcaagtgcc
gctgcatcagcaccaacaacactcccaaccagtgttgatgaaaacgcctaa
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