Alteromonas sp. Mac1: AV939_07220
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Entry
AV939_07220 CDS
T05687
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ale
Alteromonas sp. Mac1
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ale03019
]
AV939_07220
Enzymes [BR:
ale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AV939_07220
Messenger RNA biogenesis [BR:
ale03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AV939_07220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ResIII
NACHT
T2SSE
nSTAND3
HA2_N
NTPase_1
AAA_23
SLFN-g3_helicase
ABC_tran
AAA_25
SRP54
Motif
Other DBs
NCBI-ProteinID:
AMJ86392
LinkDB
All DBs
Position
complement(1700601..1704611)
Genome browser
AA seq
1336 aa
AA seq
DB search
MSSPNAPSSPVAFQIKPLYTQLDDCLSADKFPLKRRIQQFAKQLNSGENAKENNSDASVD
NPQTKLATRYEKLANDIQASKDKRAFRLKNLPEVTYPPLPVSDKKDDIKAAIAANQVVIV
AGETGSGKTTQLPKICLELGRGVSGMIAHTQPRRLAARSVATRIAEELNTPLGEKVGFKI
RFSDQVSERSYVKLMTDGMLLAEMQNDRFLNQYDTIIIDEAHERSLNIDFLLGYLRQLLD
KRPELKLIITSATIDPERFSKHFNNAPIIEVSGRTYPVEIRYHSPEDNENDTDQTDAIVG
AVDELLTEKPGDILVFLSGEREIRDTQDALMRRQYRNTEIVPLYARLSAAEQNRIFQSHT
GRRIVLSTNVAETSLTVPGIKYVIDPGVARISRYSARSKVQRLPIEAISQASANQRAGRC
GRVSDGICIRLYSEDDYLGRPEFTDPEILRTNLASVILQMLALGLGDIADFPFVQPPDNR
NINDGFRLLEEIQAIVKQKGRMQLTKMGRQIARLPIDPRYARMVVEAQRTNALMEVMVIA
AGLSIQDPRERPQDKRQQADEKHSEFTDKDSDFISLYNLWDAFKAQQNELSQNHLRKWCK
SQFINYLRMREWQDIVSQLKKSVAELGFGIVKNEPDYQAIHEAIASGLLSHIGFKDKDRE
YLGSRNTRFMIFPGSGLSKSQPKWVMAAELVETSKLFARMVAKIDPAWIESLAGHVSQHS
YSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDPPVCHELFIREGLVEGNTRLNF
GFLKENQALLEQADEFEQKTRRRDLLVDDDELVRFYASRIPVEANNEAAFKKWYKNQEAF
AKQAGGEKSGAKKISDVLTFTEDDVYRQQPGQAIENAFPDAWRQGNITMGLRYHFEPNAD
DDGVSVIIPLPVLNQVENIGFDWQVAGLRHERIVSMIRTLPKRLRRNFVPAPNFADACIA
DISETDKNGRPISLVEAVTAKLRKMTGITVEEDEWNLSQLDRHLIMHFTVVNDKGDTIAR
SDDLHALKLQCAGQVKETFEKAATPELERSGIESWDFDTLPTTFAQKMGGFEVQAFPALV
EKGDKVDIALIDEPEKAQSMHRKGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYFNPFGQI
KALIDDCIFAGIDALVGEYCEKHNTEIRNKADFDTCVDIVRAEINDKVLEIAKQVEQGLT
LAHQCQKQMKGNVPLNMINALGDCKGHLSSLVFPGFVSDIGEARLNDWNRYIKGLSRRLE
KLPIDPNKDRMHQLTVEKAVSEWEKACGKYPKGKVPQALLDARWMIEELRVSLFAQALGT
AYPISAKRISLFLADF
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcacctaacgcgccttcgtcgcctgtcgcttttcagattaaaccgctttataca
caactcgatgattgtctttcggcggataaattcccattaaaacggcgcattcagcagttc
gcgaagcagcttaatagtggtgaaaatgcaaaggaaaataacagcgatgcttctgtcgat
aacccgcaaactaaattagccactcgatacgagaaacttgcgaacgatattcaagcatca
aaagataagcgtgcgtttaggctgaaaaacttaccagaagtcacgtatccgccgttgccg
gtgagcgataaaaaagacgacataaaagccgcgattgccgcgaatcaggtggtgattgtt
gcaggtgaaaccggctcgggtaagactacacagttgccgaaaatatgcttagagcttggc
cgtggtgttagcggcatgattgcccatactcagccacgtcgattggctgcacgcagtgta
gctactcgtattgctgaagagctcaatacccccttaggtgaaaaggttggttttaaaatt
cgctttagcgatcaggtaagtgagcgaagctacgtaaaattaatgacagacggtatgttg
ctggcagaaatgcaaaacgaccgttttttaaatcaatacgacaccattattattgatgaa
gcccacgaacgcagcctaaacatcgactttttgctgggctatttaagacagctattagac
aagcgccccgaacttaaactgattataacctcggccactatcgaccctgaacgtttctcg
aagcactttaataacgcgcctattattgaagtgagtgggcgtacgtatccggtagaaatt
cgctaccacagccctgaagacaatgagaacgatactgaccaaaccgatgccattgtaggt
gcggtagatgagctattaaccgagaagccgggcgatattttagtgttcttaagtggtgag
cgggaaattcgtgacacccaagacgccttaatgcgcaggcaataccgaaacaccgaaatt
gtgcctttgtatgcgcggctttccgccgctgaacaaaatcgtattttccagtctcacacc
ggtaggcgcattgtgctgtctaccaacgtggcagaaacctcattaacggtgccgggcatt
aagtatgtaatcgacccaggcgtggcccgtatttcacgctacagcgcacgcagtaaagta
cagcggttgcctatagaagctatatcgcaggcgtctgcaaatcagcgggctgggcgatgc
gggcgtgtgtcagacggtatttgtattcgtttgtatagtgaagatgattatctcggccgc
cctgaatttaccgacccagaaatactgcgtactaatttggcctcggttattttgcaaatg
cttgcgttggggttaggggatattgccgattttccgtttgttcagccgccagataaccgc
aacatcaacgacggctttagattactagaagaaattcaggccatcgtgaaacaaaaaggc
cgcatgcagcttaccaaaatgggcaggcagattgcccgcttacctatcgacccgcgctac
gcccgtatggtagtagaagcgcagcgtaccaatgcgttgatggaagtgatggttattgcg
gcagggttatctattcaagaccctcgtgagcgaccacaagacaaacgccaacaagcagat
gaaaagcacagcgaatttaccgataaagattcagactttattagtttgtataacctgtgg
gatgcctttaaagcgcagcaaaatgaattaagccagaatcatctgcgcaaatggtgtaag
agccaatttatcaactatttgcgtatgcgcgaatggcaagacattgttagccaactgaaa
aaatcggtggcagaacttggctttggaattgtgaaaaacgagccagattatcaagctatt
cacgaagccattgcaagtgggttgctatcgcatattggttttaaagataaagacagagaa
tacttaggctcgcgcaatacccgctttatgatatttccaggttctggtctttctaagtca
cagcctaaatgggttatggcggcggaattagtagaaacctctaaattatttgcacgcatg
gtggcgaaaattgaccccgcgtggattgagtcattagcaggacatgttagtcaacacagc
tattcagagccccattggtctaaaaagcgtggcgcggttatcgcgtttgaaaaagtgacg
ctgtttggcttacccatcgtgatgaaacgagccaaagtgtatagcttaattgatccacca
gtatgtcatgaactctttattcgtgaaggcttagttgagggtaatacacggcttaacttt
ggtttcttaaaagaaaaccaggcgttactcgagcaagccgatgagtttgaacaaaagacc
cgacgcagagatcttttggttgatgacgacgaattggtacgtttttacgcctcccgtatt
cctgtagaagcgaacaacgaagcggcgtttaagaaatggtacaaaaaccaagaagccttc
gctaaacaagcgggtggagaaaagtcgggtgccaaaaaaataagcgacgtacttaccttt
accgaagatgacgtatatcgccaacagcctggtcaagctatagagaatgcgtttcctgat
gcgtggagacagggaaacatcaccatgggactgcgttatcattttgagccgaatgcggat
gacgatggtgttagtgtgattattcctttgccagtactcaatcaagtggaaaacattggc
tttgattggcaagtagcagggctaaggcatgaacgtatagtatcgatgatcagaaccttg
ccaaagcgtttgcgccgcaactttgtacctgcgcccaactttgctgatgcctgtattgcc
gatatcagcgagacggataaaaacggccgtccaattagtcttgtagaggccgtaactgcc
aagcttcgtaagatgacaggtatcaccgtagaagaagacgagtggaacttgtcgcagctt
gacagacacctaatcatgcactttacggtagtgaacgataaaggcgacacaatcgcccgt
tctgatgacctacacgccctaaaactgcaatgtgctgggcaagtgaaagaaacttttgaa
aaagcggccacgccggaacttgagcgaagtggtatcgaaagctgggatttcgacacactg
ccgactacctttgcgcaaaagatggggggctttgaagtgcaagctttccctgcattggta
gaaaagggcgataaggtagatatcgcgcttatcgacgagcctgaaaaagcgcaatctatg
caccgaaaaggtgtgaacgtgttgataaaaaacgccatgccgtcgccgcttaattactta
cagagtaagctgcccaataaagctaagttggggctttacttcaacccgtttgggcaaatt
aaagcgcttattgatgattgtatttttgccggtatagatgcgctggtgggggaatactgt
gaaaagcataataccgaaattcgtaacaaggctgattttgatacctgcgtagatatcgtg
cgggcagaaattaacgacaaagtactagaaatagctaagcaggtagagcagggcttaacc
cttgcacatcaatgtcaaaagcaaatgaaaggtaatgtgcccctcaacatgataaacgca
ttgggcgattgcaaagggcatctttcaagcttggtgttcccaggctttgtatctgatatt
ggtgaagcacgacttaacgattggaaccgttatattaaagggttatctcgtcgtttagaa
aagctaccgattgatccgaacaaagaccgaatgcatcagctcacggtagaaaaggcggtc
agtgagtgggaaaaagcctgtggtaaatacccgaaaggcaaagtaccacaagcgttattg
gatgcacgttggatgattgaagaattaagggtgtctttatttgcgcaagcattaggtacg
gcttaccccatatcggcaaagcgtatctcactgtttttagctgatttctaa
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