KEGG   Alteromonas sp. Mac1: AV939_13370
Entry
AV939_13370       CDS       T05687                                 
Name
(GenBank) DNA-binding protein HU
  KO
K03530  DNA-binding protein HU-beta
Organism
ale  Alteromonas sp. Mac1
Brite
KEGG Orthology (KO) [BR:ale00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ale03032]
    AV939_13370
   03036 Chromosome and associated proteins [BR:ale03036]
    AV939_13370
   03400 DNA repair and recombination proteins [BR:ale03400]
    AV939_13370
DNA replication proteins [BR:ale03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    AV939_13370
Chromosome and associated proteins [BR:ale03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    AV939_13370
DNA repair and recombination proteins [BR:ale03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      AV939_13370
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-DNA_bdg HVO_A0261_N HU-CCDC81_euk_2 HU-CCDC81_euk_1
Other DBs
NCBI-ProteinID: AMJ87471
LinkDB
Position
complement(3125624..3125896)
AA seq 90 aa
MNKSQLIDQIAAGADISKAAAGRALDAFTDSVTAALKDGDQVALVGFGTFSVRERSARSG
RNPQTGETIQISAAKVPSFKAGKALKDACN
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgaacaagtctcaacttatcgaccaaattgctgctggcgcagatatttcaaaagcagct
gccggccgcgctctagatgcattcactgactcagtaactgcagcacttaaagacggtgac
caagtggcactagtcggtttcggtactttctcagtacgtgagcgctctgctcgtagtggt
cgtaatccacaaactggtgagactattcagatttcagcggcgaaagttccttctttcaaa
gctggtaaagctctgaaagacgcttgtaactaa

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