Alteromonas sp. Mac1: AV939_16640
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Entry
AV939_16640 CDS
T05687
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ale
Alteromonas sp. Mac1
Pathway
ale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV939_16640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ale03019
]
AV939_16640
Enzymes [BR:
ale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AV939_16640
Messenger RNA biogenesis [BR:
ale03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV939_16640
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_22
CMS1
Gag_p24
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AMJ88059
LinkDB
All DBs
Position
complement(3925447..3926838)
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AA seq
463 aa
AA seq
DB search
MSFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLL
HRLLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKAL
RSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQ
TLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVLQHLVPIDKSKKTAALISLIKK
NGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGDIDVLVAT
DIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKDIET
LIQQLLPRHVIEGFEPQAKVPETTLSAPKKPNKPKRPRQSQGGNGNGNSQGDRPARRSGS
RNGPRGQGRPGGSGKPGGSGKPSGSGRSNAGKPSSRRAPTSKA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctgagttgggcctagctgccccgctactacaagctattgaaaaacagggc
tatacaacgccttcgccaattcagcagcaagctattcccattattcttgaaggcaaagac
atactggcagcagcacaaacaggtacaggtaaaaccgcgggcttttctttacctttgcta
caccgtttattggatggcagacccgctgcatctaattgtgttcgcgcacttattttaacg
ccaacccgtgaactcgcggctcaggtggaagaaaacgtaaaatcgtttagtgaatttttg
ccacttaaaaccgccgtggtgtttggtggtgtgggtattaacccgcaaatgaaagcgcta
cgctcaggtgttgatgtacttatcgccaccccaggccgcttgcttgacctttaccaacaa
aacgcggtgaaattcagccaactagaaactttggtgttagatgaagcggatagaatgcta
gacatgggcttcatccatgacataaagcgtattcttaaattgttgccaactaagcgacaa
actctattgttctcagccacgttctcgtctgaaataaccacgctggcgcaaactattacg
aacaaccctgaaaaagtgtctacggcacctgctaatactactgttgaaaccgttctgcag
catttagtgcctatcgacaagtctaaaaaaacagcagccttaattagtctaattaagaaa
aatggttggaagcaggtgttagtgtttagtagaactaagcatggcgctaaccgtattgca
gacaaactgagtcgagcgcgtattcccagtgcagcaatccatggcaataaaagccaaggt
gcacgtactaaggcgctgtctgagtttaaaagtggtgacattgatgtgctagtagcaact
gatatcgctgcccgaggtatcgatatcaacgagctaccgattgttattaatatcgacttg
ccaaacacgccagctgattacgttcaccgaattggcagaactggtagagcaggggcgagt
ggtcaagcatggtctttcgttagtattgatgaactagatcaacttaaagatatcgaaacc
cttattcaacaactgcttccgcgccacgttattgaaggtttcgagcctcaagctaaagta
ccagaaactacattgtcagcgcctaaaaagccaaacaagcctaagcgtccgcgccaatct
caaggtggcaatggtaacggtaatagccaaggtgacaggcccgcacgtcgttcaggtagc
cgaaatggacctcgtgggcagggcagaccgggcggttctggcaagccaggcggctctgga
aaacctagtggttcaggtcgttcaaacgctggcaaacctagctcgcgtagagcgccaacg
agtaaagcttaa
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