KEGG   Agrobacterium leguminum: CFBP4996_04785
Entry
CFBP4996_04785    CDS       T09300                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
aleg  Agrobacterium leguminum
Pathway
aleg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aleg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFBP4996_04785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aleg03019]
    CFBP4996_04785
Messenger RNA biogenesis [BR:aleg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CFBP4996_04785
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 RNase_J_C Lactamase_B RMMBL Anti-Pycsar_Apyc1 Regulator_TrmB
Other DBs
NCBI-ProteinID: WFS66611
LinkDB
Position
Circular:967744..969411
AA seq 555 aa
MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDIS
YIAEQKKNLKGIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP
VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGNVIHTGDWKIDEAPSLGPLTD
EARFRAIGEEGVLALMCDSTNSVRDGVSPSEHEVSEGLRQIIENAEGRVAVTTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVLILT
GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIDIKNGLIEQGVHIVTD
NEALVHVSGHPRRNELLKMYEWTKPQIVVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
VLRLAPGPAEVIDDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLDLLREAVRRAVRAAANQ
SWGKKPIVTVFVTKV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atggctaaacaggacgaactggtctttgtgccgcttggcggcgtgggtgaaatcggcatg
aatctggcgctttacggctacgggccggaaagcaaacgccaatggatcatggtggattgc
ggcgtgaccttcgccggcccggatctgccgggcgtcgatctggtactgcctgacatcagc
tatatcgccgagcagaaaaagaacctcaagggcatcatcatcacccacgcccatgaggat
cattacggcgcgctgaacgatctctggcccggcctcaacgtgccggtctatgcctcgccc
ttcaccgccggtatgctggaagccaagcgcgcctatgaaggcacgcgtgccgaaattccg
gtgacgatcttcaaggcgggcgaccgcatcaatgtcggtccgttcgaaatcgaggctgtc
ggtgtcaaccactccattccggagccgatgtcgctggtcatccgcacgccgctcggcaat
gtcatccacaccggtgactggaaaatcgacgaagccccgtcgctcggtccgttgacggat
gaagcccgcttccgcgctatcggcgaagaaggcgtgctggcgctgatgtgcgacagcacc
aattcggtgcgcgatggtgtgtcgccctcggagcacgaggtttccgaaggcctgcggcag
atcatcgaaaatgccgagggtcgtgtggccgtcaccaccttctcctccaatgtcggtcgc
atccgctcgattgcgcaggccgcggaagcagccggccgcgaggtgctgttgctcggctcg
tcgctgaagcgcgtcgtcaacgtctctcaggatctcggcatcatggaaggcatcaagccg
ttcctcgccgaagacgaatatggctatattccgcgcgaccgggtggtgctgatcctgacc
ggttcgcagggcgagccgcgcgccgcactcgccaagctttcgcgcgacgagatgcgcaat
gtggcgctggcttccggcgatacggtggtgttctcatcgcgcgccatccccggcaatgag
aaggcgatcatcgatatcaagaacggcctcatcgagcagggcgtccatatcgtcaccgac
aatgaggcgctggtgcatgtctccggccatccgcgccgcaatgaacttctgaagatgtac
gaatggacgaagccgcagatcgtcgtgcccgtccatggcgaggcggcgcatctggtggcg
cagaaggaactggccgaacaggccggcatctcgcaggtgccgaaggtgcgcaacggcaat
gttctgcgccttgcgccgggtcctgcggaagtcatcgacgacgtgccgcatggccgggtc
ttcaaggatggcaatctcgtcggtgatatggacgagatgggcatcagcaaccgccgcaag
ctgtccttcgccggccatgtggccgtcaatgtcgtgctggatagccgttacgatttcctc
ggcgatcccgatgtggtgcccttcggtctgccggaattcgatgacgaggacgaggcgatg
gaagacacgctttatgacgccgtgctcggcgccgtcgaaagcattccgcgcgcccgccgc
aaggatctggatctgctgcgcgaagcggtgcgtcgcgccgtgcgcgccgccgccaaccag
agctggggcaagaagccgatcgtgacggtttttgtaaccaaggtctga

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