Agrobacterium leguminum: CFBP4996_04810
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Entry
CFBP4996_04810 CDS
T09300
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aleg
Agrobacterium leguminum
Pathway
aleg03030
DNA replication
aleg03430
Mismatch repair
aleg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aleg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFBP4996_04810 (dnaE)
03430 Mismatch repair
CFBP4996_04810 (dnaE)
03440 Homologous recombination
CFBP4996_04810 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aleg03032
]
CFBP4996_04810 (dnaE)
03400 DNA repair and recombination proteins [BR:
aleg03400
]
CFBP4996_04810 (dnaE)
Enzymes [BR:
aleg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CFBP4996_04810 (dnaE)
DNA replication proteins [BR:
aleg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CFBP4996_04810 (dnaE)
DNA repair and recombination proteins [BR:
aleg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CFBP4996_04810 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
WFS66616
LinkDB
All DBs
Position
Circular:974490..977990
Genome browser
AA seq
1166 aa
AA seq
DB search
MGDAVVRGETSGETLKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVSDGQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYER
LVDIVSRAYLEGEGSGHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKER
LLTLKSLFGDRLYIELQRQSGYDRSHERRMIGLAYDHDIPLVATNEAFFPSKADYEAHDA
LMAVAHNAIVSDDSRFRLTPDHYLKSRAEMAALFADLPEALENTVEIALRCSYVLKKRGP
ILPRFTGASDDPEAAEHAEAEELRRQAVEGLDQRLAALGMAAGYTEQDYRDRLDFELGVI
SRMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFL
NPERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMP
YGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHAST
HAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVD
FVAKRGIKVDLAAIPLDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALV
ALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIKEEMDKQRERFVDGAIENGVSKPQANTIFDLLAKFANYGFNKSHAA
AYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQ
FETGENRIYYSLAAIKGVGEGAVEHIVQVRDGKPFTSLEDFCLRIDPKQINRRVLESLIN
AGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRAIGQSDMFGSGGGSGPEKLILPAFQPWL
ASEKLLREYQVLGFYLTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQ
ERKTRTGNKMGIVTFSDASGQYEAVLFSEGLGQFRDLLEVGKSLVITVQAEERPEGIGLR
IQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTKGDGSVYFIVIKDEGSREIEVEL
TEKYRISPEIAAALRSAPGVVDVELV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatgcggttgtgcgtggagagacctctggcgaaacgctgaaaactcccggtttc
gtccatttgcgggttcattccgcctattccctgcttgagggggccttgcccctcaagaaa
atcatgtccaaggccgtctcggacggccagccggccattgccattaccgataccaacaac
ctctttgttgcgctggaattttccgaaaaggcgcgcgatgaaggtttgcagccaatcatc
ggctgccagctgtcgatcgacatgcaggatgcggcggaggaccgccgcaaccacaacagc
caccttcagaaacttcccgccatcgttctgctggcggccaatgccgaaggttacgagcgg
ctggtggatatcgtcagccgcgcctatctggaaggcgagggcagcggccattccgtgcat
attacccgtgcatggctggaggaagcttccaatgccggcctgatcgcgctgacgggcgca
tccggcggtccggtggatatggccttgaaggaaggtcacgctgcccaggcgaaagaacgg
ctgctgacgctgaagtcacttttcggtgataggctttatatcgaattgcagcgccagtct
ggttatgaccgttcccatgagcggcgcatgatcggccttgcttatgaccatgatattccg
ctggttgccaccaacgaagcgtttttcccttccaaggccgattatgaggcgcatgatgcg
ttgatggctgtggcgcataacgccatcgtctccgatgacagccggttccggctcacgccc
gaccattacctcaaaagtcgggcggaaatggcggcgctgtttgccgatcttcccgaggcg
ctggaaaacaccgtcgagatcgcgctgcgctgctcctatgtgctgaagaagcgcgggccg
atcctgccgcgtttcaccggcgccagcgatgacccggaggcggcggaacacgccgaagcc
gaagagcttcgccgccaggcggtggaggggctggatcagcggctggcggcgctcggcatg
gcggccggctataccgagcaggactatcgcgacaggctcgatttcgaactcggtgtcatc
tcgcgcatgaagttccccggttactttctgatcgttgccgacttcatcaaatgggccaag
cagcacgatattccagttgggccgggccgcggttcgggtgcgggctcgctagtcgcttat
gcgctcacgattaccgatgtcgatcctctgcgcttctcgctgctgttcgaacgcttcctc
aatcctgaacgcgtttcgatgcccgacttcgatatcgacttctgtcaggaccgtcgcgaa
gaggtgatccgttacgtgcaggccaaatatggccgcgagcaggtggcgcagatcatcacc
ttcggttcgctgcaggcgcgcgcggccttgcgcgatgtcggccgcgtgctggaaatgccc
tatgggcaggtggacaagatctgcaagctggtgcccaacaacccggccaacccgacaccc
ctgtcgaaagcgatcgaggaagagccgcgcctgcaggaagaggcggacaaggagccggtg
gttgcccgccttctggatatcgcccagaagatcgaagggctttaccgccacgcctccacc
cacgccgccggtatcgtcatcggtgaccgcccgctgtcgaagctggtgccgatgtatcgc
gatccgcgctcggatatgccggtcacccagttcaacatgaaatgggtggaaagcgccggc
ctcgtcaaattcgacttcctcggcctgaagacgctgacggtgctgaaggtcgccgtcgat
ttcgttgccaagcgcggcatcaaggtcgatctcgcggcgattccgctggatgacgccaaa
acctacgagatgctctcgcgcggcgaaaccatcggcgtgttccaggtggaaagtgccggc
atgcgcaaggcgctgatcggcatgcggccggactgcatcgaggacatcatcgcgctggtg
gcgctttatcgccccggcccgatggaaaacatcccggtctataatgcccgcaaacatggc
gaggaggagctggaatcgatccatccgaccattgaccatctgctcaaggaaacgcagggc
gttatcgtttatcaggaacaggtgatgcagatcgcccaggtcctctccggttattcgctc
ggcgaagccgatcttctgcgccgcgccatgggcaagaagatcaaggaggagatggacaag
cagcgcgagcgtttcgtcgacggcgccatcgagaacggcgtctcgaagccgcaggccaac
accatcttcgaccttctcgcgaaattcgccaattacggcttcaacaagagccacgccgcc
gcctacgccatcgtgtcctaccagaccgcctatatgaaggcgcattatccggtggagttc
ctggcggcctccatgacgctcgatatggcgaacacggaaaagctcaacgatttccgccag
gatgccggccgccttggcatcgaggtcgtcgcaccttcggtgcagacgtcgttccggcaa
ttcgagacgggcgagaaccgcatctattattcgctcgccgccatcaagggcgtgggcgaa
ggggcggtggagcacatcgtccaggtacgcgacggcaagccgttcacgagccttgaggat
ttctgcctgcgcatcgatcccaagcagatcaaccggcgtgtgctggaaagcctgatcaat
gccggcgctttcgattgtttcggccgcgaccgcgccgagctgatcggcgggctggaccgc
atcatcggttatgcgcagatggcgcagaacaaccgcgccattggacaatcggacatgttt
ggctcgggtggtggaagcggcccggaaaagctcatccttcccgccttccagccctggctc
gcctccgaaaagctgctgcgcgaatatcaggtgctcggtttttacctcaccgcccatccg
ctcgatacctaccgccccgtgctggaaaagctgcgggtgcagaatttcgccgatttttcc
gccgcggtgaaacagggcgcgactgccgggcgtctggccggcaccgtgaccggcaagcag
gagcgcaagacccgcaccggcaacaagatgggcatcgtcaccttctcggacgcatcgggc
caatatgaggcggtgctgttttccgaagggctcggccagttccgcgatctgctcgaggtc
ggtaaatcgctggtcatcaccgtgcaggcggaagagcgtccggaaggcatcggtctgcgt
atccagacggcgcagtcgctggaagagaaatccgtgcagatgcagaaggcgttgcgtgtt
tatgtgcgcgattccggcccgctgaaaacggtggcccgccacctcaatacgaagggcgat
ggctcggtctatttcatcgtcatcaaggatgagggcagccgcgaaatcgaggtggagctg
acggagaaataccgcatctcaccggaaatcgccgctgcgctgcggtccgcgcccggtgtc
gtcgatgtggaactggtgtga
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