Agrobacterium leguminum: CFBP4996_07225
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Entry
CFBP4996_07225 CDS
T09300
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aleg
Agrobacterium leguminum
Pathway
aleg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aleg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFBP4996_07225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aleg03400
]
CFBP4996_07225 (mfd)
Enzymes [BR:
aleg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFBP4996_07225 (mfd)
DNA repair and recombination proteins [BR:
aleg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFBP4996_07225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
UB2H
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WFS67072
LinkDB
All DBs
Position
Circular:complement(1467084..1470581)
Genome browser
AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVSSADTPLTIGNVPSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILGF
VAPDIPVMTLPAWDCLPYDRVSPSADTSARRLAALSGLIAHAKKPHPAIVLVTVNAMLQK
MAPRDIIESLGFSARPGNQIRMEEIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEQLETAFDYLKDFRIVTDHTAREAAKERSKL
VLDYYDARRSSGETKGSTQGAPYKPVSPGQLYLDGKSFDAALAAVNAVRLTPFNEQDSEG
RPVATLDAHVGPRWARPPTEGESEERINVFDLAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVEKLGKGEAASAVLSLEAGFETGTLAVIGEQDILGDRMVR
RSKRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLRTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEAQLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PVLTAPDGLYDEFAARFPYDETEDQLNAIESIREDLGAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLSRQHFRTFSERFRGLPIRVQQASRLVGSKELTLTKKEVA
DGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEQVQDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVAYIGKQGTMAKIRPDHSLFLTR
DLPTPEKRLAGAAMIMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtgtcgtcggccgatacgccgctgaccatcgga
aacgtgccttccggcatggaagcccttttgcttgccgatatggcacgggcgggcacgtcg
gtcgcctatgtgatgtcggatggccagcgggtcgccgatctcgaacagatcctcggtttc
gtcgcgcctgacattccagtgatgacgctgcccgcctgggactgccttccctatgaccgc
gtgtcaccgagcgccgacacttcggcgcgccggctggcggcgctctccggcctcatcgct
cacgcgaaaaagccgcatccggccatcgtgctcgtcaccgtcaacgccatgctgcagaag
atggcgccgcgcgatattatcgagagcctcggcttttcggcccgccccggcaaccagatc
cgcatggaagagattgccgcgcggctggaacgcaacggtttcgaccgggtggcgacggtg
cgcgaagtgggtgaattcgccgtgcgcggcggtattctcgatgtgttcgtgccgggcacg
gaagagccggtgcggctcgatttcttcggcgatacgctggagagcatccgcaccttcgat
ccggccagccagcgcaccatcggtcaggcgcgctcgctcgatttgaacccgatgagcgaa
gtgacgctaacgccggatacgatcagccgtttccgcaagaattacctgtcgctattcggc
gcggcgacccgcgacgacgcgctttatcaggccgtctccgaaggtcgccgttatgccggc
atggagcattggctgccactgttttacgagcagctggagaccgccttcgattatctgaag
gatttccgcatcgtcaccgatcacacggcgcgggaggcggcgaaagagcgctccaagctg
gtgctcgattattacgatgcgcgccgcagctccggcgaaaccaagggctcgacccagggc
gcgccctataaaccagtttcccccggccagctttatctcgatggcaagagcttcgatgcc
gcactcgccgccgtcaacgcggtacgcctgacacccttcaacgagcaggacagcgaaggc
cgcccggtcgccacgctcgatgcccatgtcgggccgcgctgggcgcgtccgccaaccgag
ggcgagagcgaagaacggatcaacgttttcgatctggcggtgaagcacattgccgaacgc
cgcgccaagggctggaaggtgctgataacaggctggtcggaaggttcgctcgaccggctg
ttgcaggtgctgaatgagcacgggcttgaaaagatcaagccagtcacctcgctgaaagag
gtagagaagctcggcaagggcgaggcggcctcggcggttctgagccttgaggcgggtttc
gaaaccggaacgctggcggttatcggcgagcaggatattctcggcgaccgcatggtgcgc
cgctccaagcgccgcaagcgcggcgcggatttcatctcggaagtggcggggctggatgag
ggctcgctggtcgtccatgccgaacatggcatcggccgtttcgtcggcctgcggacaatc
gaggcggcgggtgcgccgcgcgcttgtctggaactgcattatgccgatgacgccaagctg
ttcctgccggttgaaaacatcgatcttctgtcccgttacggttcggatgcggcggaagcg
cagctggacaagcttggcggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctggacatggcagacgagcttatccgcatcgccgccgcgcgcctggtgcgccatgcg
ccggtgctgacggcgccggatgggctttacgacgaattcgccgcccgtttcccctatgac
gagacggaagaccagctgaacgcgattgagtccattcgcgaggatctcggcgccggccgg
ccgatggatcggctcatctgcggcgatgtcggtttcggcaagaccgaggtggcgttgcgc
gccgcgttccttgccgccatgaacggcgtgcaggtggctgtggtggtgccgaccacgctg
ctttcccgccagcatttccgcaccttctcggaacgtttccgtgggttgccgatccgggtg
cagcaggcttcgcgcctcgtgggctccaaggaattgacgctgacgaaaaaggaagttgcc
gatggcaagacggatattgtcgtcggtacccatgcgctgctcggcgcaggcatcagtttc
gccaatctcggcctgctgatcatcgatgaagagcagcattttggtgtgaagcacaaggag
cggctgaaggagctgaagagcgacgtgcatgtgctgacgctctctgcgacgcctattccg
cgcaccttgcagcttgccatgacgggcgtgcgggaactgtcgctcatcaccacgccgccg
gtggaccgcatggcggtgcgcaccttcatttcgccgttcgacccgctcgtcatccgcgag
acgctgatgcgcgagcattatcgcggcggccagagcttctatgtctgcccgcgccttgcc
gatcttgctgacattcacgccttcctgcaatcggatgtgccggaactgaaggtggcggtg
gcgcatgggcagatgccggccggcgaactcgaagacatcatgaacgccttttatgacggc
aaatatgatgtgctgctgtcgaccaccatcgtcgaatccggccttgatgtgccgactgcc
aatacgctgatcgtgcaccgcgccgacatgttcggccttgcccagctttaccagctgcgc
ggccgtgtcggccgttccaaggtgcgcgccttcgcgctcttcaccctgccggtcaacaag
gtgctgacgacgatggccgagcggcggctgaaggtgctgcaatcgctcgatacgctgggc
gccggcttccaactggcgagccacgacctcgatattcgcggtgcgggcaatctgctcggc
gaggaacagtccggccatatcaaggaagtcggtttcgagctttaccagcagatgctggaa
gaagcggttgccgaagtgaagggcgacgagcaggtgcaggatagcggctggtcgccgcag
atttcggtcggcacctctgtcatgatcccggaggactatgttcccgatctgcatctgcgc
atgggtctttaccgccgtctcggtgagcttgcggatatcagcgagatcgatggtttcggc
gcggaaatgatcgaccgtttcggcccgctgccgaaagaggtgcagcatctcctcaagatc
gtctacatcaagtcgctctgccgcactgccaatgtcgagaaggtggatgccgggccgaag
ggcgtggtcgtgcagttccgcaacaaggaattccccaatccggcagcacttgtcgcctat
atcggcaagcagggcacgatggcgaagatccgccccgatcacagcctgttcctgacgcgc
gacctgccgacgccggaaaagcggctggcgggtgcggcgatgatcatgacacagcttgcc
gaactggcgcggtcctaa
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