Agrobacterium leguminum: CFBP4996_08100
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Entry
CFBP4996_08100 CDS
T09300
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aleg
Agrobacterium leguminum
Pathway
aleg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aleg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFBP4996_08100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aleg03021
]
CFBP4996_08100 (rpoC)
03400 DNA repair and recombination proteins [BR:
aleg03400
]
CFBP4996_08100 (rpoC)
Enzymes [BR:
aleg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFBP4996_08100 (rpoC)
Transcription machinery [BR:
aleg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFBP4996_08100 (rpoC)
DNA repair and recombination proteins [BR:
aleg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFBP4996_08100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WFS64514
LinkDB
All DBs
Position
Circular:complement(1627878..1632086)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRVELAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSRDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVSGENIVKAGTLIDEADVAAIEKAGIQSVRIRSALTCEVQIGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIAIKNRN
ILRNSEGALIAMGRNMAVTILDERGQERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
AVAKLARGGEARFQLSVDAILSVEPGAKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELDDMNDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGAGSANQMLQDMTDQAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgcgcagcatttcgattcc
atccggatttcgatcgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgtacgttcaagccggaacgcgacggtctcttctgcgcg
cgcatcttcggaccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgttgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgcagcgccggttgcccatatctggttcctgaaatcg
cttccctcgcgtatctcgaccctgctcgacatgacgctgaaggatgtcgagcgcgttctc
tatttcgagaactacatcgtcaccgaaccgggcctcacttcgctgaagcagaaccagctt
ctgtccgaagaagagtacatgatcgccgtcgacgaattcggcgaagaccagttcaccgcc
atgatcggcgctgaagccatctatgagatgctggcttcgatgaacctcgaaaagatcgcc
ggcgacctgcgcgtcgagcttgctgaaacgacttctgacctgaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggaaagcggcaaccgtccggaatggatgatc
atgaaggtcgttccggtcattccaccggacctgcgcccgctggttccgctggatggcggc
cgtttcgcgacgtccgacctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgtgcgcctggtatcatcatccgcaacgaaaagcgtatg
ttgcaggaatccgtcgatgcgctgttcgacaacggccgtcgcggtcgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgccagaaccttctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctatgcccgcctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcaccgacgctgcaccgtctgggtatccaggctttcgaa
cccatgctggtcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggctgtccacgttccgctttcgctggaagcccagctc
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcaaacggccacccg
atcatcgttccttcgcaggacatggttctcggcctgtattacctgtcgatcatgaaccag
aacgagccgggcgaaggcatggccttctcggatatcggcgagttgcatcacgcgcttgaa
aacaaggtcgtgacgctgcatgccaagatccgtggccgcttcaagaccgtggatgccgat
ggcaagccggtttcgaagatccatgagacgacccccggccgtatgctcatcggcgaactt
ctgccgaagaacgtcaacgtgcctttcgacgtctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggctttgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggttattccggacagcaaggtgaagatcgtcggcgacaccgaagctctc
gtgaaggaatacgaacagcagtataacgatggtctcattacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggctaccgaaaaggtcgccgaagagatgatggcacgc
atcaaggctgtcgagttcgatccggaaacgggccgccagaagccgatgaactccatctac
atgatgtcccactcgggtgctcgtggttctccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggcgaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctc
gcagacaccgccctgaagacggcgaactcgggttacctgacccgtcgtctcgtcgacgtc
gcgcaggattgcatcgtcaactccagggattgcggcaccgacaagggcctcaccatgacc
gccatcgtcgatgccggtcaggtcgttgcctcgctcggcgcacgtatcctcggccgtacg
gctctggacgacatcgatcatccggtttccggcgaaaacatcgtcaaggccggcacgctg
atcgacgaagccgacgtggccgccatcgagaaggccggtatccagtccgtccgcatccgt
tcggctctgacctgcgaagtgcagatcggcgtctgcggcgtgtgctacggtcgtgacctt
gcacgtggtacgcctgtcaacatgggcgaagccgtcggcgtcatcgccgcacagtccatc
ggtgaaccgggcacgcagcttaccatgcgtaccttccaccttggcggtacggcgaacgtg
gtcgaccagtcgttcctcgaagcctcttacgagggcacgattgcgatcaagaaccgcaac
atcctgcgcaactccgaaggcgcactcatcgcgatgggccgtaacatggccgtcaccatt
ctcgatgagcgtggtcaggagcgttcttcgcagcgcgttgcctatggttcgaagatcttc
gttgacgacggcgacaaggttaagcgcggtcagcgtcttgcagagtgggacccctacacc
cgtccgatgatgacggaagtggaaggtaccgttcacttcgaggacctcgtcgatggtctt
tccgttctggaagccaccgacgaatctaccggcatcaccaagcgtcaggttatcgactgg
cgttcgacgccgcgcggttcggacctcaagcccgcgatcgtcatcaaggacgcttccggt
gcggttgcgaagcttgcccgtggtggcgaagcccgcttccagctctcggtcgacgccatc
ctgtcggtcgagccgggtgcgaaggtctcccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagacgaaggacatcaccggcggtctgccgcgcgttgccgaactgttcgaa
gcccgtcgtccgaaggaccacgccatcatcgcagagatcgatggtacgatccgtcttggc
cgcgactacaagaacaagcgtcgcgtgatgatcgagcctgcggaagacggcgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggaaggcgactatatcgaa
aagggtgaatacatcctcgacggtaacccggcaccgcacgacattctggcgatcaagggc
gtggaggctctggcttcctacctcgtgaacgaaatccaggaagtctaccgtctgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggttgaa
atcaccgatgcgggcgacagccagtacatcgtcggcgacaatgtcgaccgtatcgagctg
gacgacatgaatgaccgtctgatcgaagagggcaagaagccggcttacggcgatcctgtc
ctgctcggcatcaccaaggcttcgctgcagacgccgtccttcatctcggccgcatccttc
caggaaaccaccaaggttctcacggaagctgcaatcgccggcaagacggatacgctgcag
ggcctcaaggaaaacgtcatcgtcggccgtctcatcccggccggtactggcggcaccatg
acgcagatccgccgcatcgccacctcgcgcgacgacctcattctcgaggaacgtcgcaag
ggcaccggtgcaggctctgcgaaccagatgctgcaggacatgacggaccaagctccggcc
gccgaataa
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integrated database retrieval system
