Agrobacterium leguminum: CFBP4996_10045
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Entry
CFBP4996_10045 CDS
T09300
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aleg
Agrobacterium leguminum
Pathway
aleg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aleg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP4996_10045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aleg03019
]
CFBP4996_10045
Enzymes [BR:
aleg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFBP4996_10045
Messenger RNA biogenesis [BR:
aleg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBP4996_10045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
CMS1
AAA_19
Flavi_DEAD
AAA_22
Utp25_C
Cas3-like_C_2
Snf7
Motif
Other DBs
NCBI-ProteinID:
WFS64877
LinkDB
All DBs
Position
Circular:2053447..2054919
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AA seq
490 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTCRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPGKAADKVEQYVHFVAGKNDKTELLKKS
LNENPDGRAIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGHQRGPREGGRHNGESRPSRHHA
PRDADNDLEVTSDFKRVKQAEGDAGRPAGPRKHRRPARKPGGSGANRHAPAGGNGQEKRA
SGNGHRGRNR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaagatcgtggccagcgttacccagctt
ggctatacgacccctactcccattcaggcaaaggccattccgctgctgctcgaaggccgt
gacctgatcggcctcgcacagaccggcaccggcaagaccgccgctttcggcctgcccatc
atcgaaatgctgatgaagcaggcggaccgcccggcaaaccgcacctgccgcacgctcatc
ctcgcccccacgcgcgagctggtgaaccagatcggcgaaaacctgcgctccttcgtgaag
aagacgccgctgcgcatcaaccaggtggttggcggcgcatcgatcaacaagcagcagctc
cagctcgaaaagggcacggacattctggtggcgacccccggccgcctgctggacctcatc
gcccgcaacgccatctcgctctccaaggtcacctatctggtgctcgatgaagcggaccag
atgctcgacctcggcttcatccacgatctgcgcaagatttcgaagatggtgccggccaag
cgccagacgctgctcttctcggccaccatgccgaaggcgatcgccgatctggcccacagc
tacctgaccgatccgctcaaggtggaagtgaccccgcccggcaaggcagccgacaaggtg
gagcaatatgttcacttcgtcgccggcaagaacgacaagaccgagcttctgaagaagtcg
ctcaacgaaaacccggatggccgcgccatcgtgttcctgcgcaccaagcacggtgccgag
aagctttacaagcatctcgaacatatcggcttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgcgctctcaagggcttcaaggacggcgagatcaaggtgctg
gtggcaaccgacgtcgctgcccgcggcatcgacattccggccgtaacgcacgtcttcaac
tatgatctgccggaagtgcccgacgcctatgttcaccgcatcggccgtaccgcccgcgcc
ggccgcgacggcatcgccattgcgttttgcgcaccggacgaaacccgcctgctgcacgac
atcgaaaagctgatgaagatcgatattccggtcgcctccggcgaacgcccggccggtctt
gcgagcccaacgcgccccaacaacaaccgcggcggccgcaacaacaatggcggccatcag
cgcggtccccgcgaaggcggacgtcacaacggcgaatcccgcccgtcgcgccaccatgct
ccgcgcgacgcggacaacgatctggaagtcacctccgacttcaagcgcgtcaagcaggct
gaaggcgacgctggccgcccggccggcccgcgcaagcaccgccgcccggcccgcaagccc
ggcggcagcggcgccaaccgccacgcccctgccggcggcaacggccaggaaaagcgcgct
tccggcaacggtcatcgtggccgcaaccgctaa
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