KEGG   Agrobacterium leguminum: CFBP4996_12980
Entry
CFBP4996_12980    CDS       T09300                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aleg  Agrobacterium leguminum
Pathway
aleg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aleg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFBP4996_12980 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aleg03021]
    CFBP4996_12980 (rho)
   03019 Messenger RNA biogenesis [BR:aleg03019]
    CFBP4996_12980 (rho)
Transcription machinery [BR:aleg03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CFBP4996_12980 (rho)
Messenger RNA biogenesis [BR:aleg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CFBP4996_12980 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT DUF6360 AAA
Other DBs
NCBI-ProteinID: WFS65431
LinkDB
Position
Circular:complement(2714127..2715392)
AA seq 421 aa
MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
LDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKNNSDFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagcaaatcgcctaccgacttgctgactttt
gccgaatccctggaagttgaaaatgcgagcaccatgcgcaagcaggagctcatgttcgca
atcctcaaggttctcgcgagccaggacatcgaaatcatcggcgagggcgtcgttgaagtc
ctgcaggacggtttcgggttcctgcgatccgcaaatgcaaactatctgcccggtccggac
gatatctatatctcgccgtcgcagatccgccgcttctcgctgaagaccggcgatacagtc
gaaggcccgatccgcggccccaaggaaggcgaacgttatttcgcgcttctcaaggtcaat
acgatcaatttcgacgatccggaaaagatccgccacaaggttcacttcgacaatctgacg
ccgctttatccgaatgagcgcttcaagatggaactggatgttccgacctcgaaggatttg
tcgtcgcgtgtgatcgatctcgtcgcgccgctcggcaagggtcagcgcggattgatcgtg
gcgccgccgcgcaccggtaaaaccgttctgttgcagaacatcgcccattccatcacggca
aaccatccggaatgttacctgatcgttctcctgatcgatgagcgtccggaagaagtgacc
gacatgcagcgttccgtgaagggcgaggttgtgtcctccacgttcgacgaaccggccgtt
cgtcacgtgcaggtcgccgagatggtcatcgaaaaggcgaagcgcctggtcgaacatggt
cgtgacgtcgtcattctgctcgattccatcacgcgcctcggccgtgcctacaacacggtt
gttccctcctccggcaaggttctgacgggtggtgtggatgccaacgcgctgcagcgcccg
aagcgtttcttcggcgccgctcgcaacatcgaagaaggcggttcgctgaccattatcgcg
accgcgctgatcgataccggcagccgtatggatgaagtcatcttcgaagaattcaagggt
accggtaactcggaaattgtgctcgaccgcaaggttgccgacaagcgcatcttcccggca
ctggatattctgaaatccggtacgcgtaaggaagacctgctggtgccgcgtcaggatctg
cagaagatcttcgttcttcgccgtattcttgcgccgatgggtacgatggatgccatcgag
ttcctgatcgacaagctgaagcagaccaagaacaattcggatttcttcgaatcgatgaat
acctga

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