Agrobacterium leguminum: CFBP4996_26190
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Entry
CFBP4996_26190 CDS
T09300
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aleg
Agrobacterium leguminum
Pathway
aleg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aleg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFBP4996_26190 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aleg03400
]
CFBP4996_26190 (ligD)
Enzymes [BR:
aleg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFBP4996_26190 (ligD)
DNA repair and recombination proteins [BR:
aleg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFBP4996_26190 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
WFS69565
LinkDB
All DBs
Position
pAtCFBP4996b:complement(5838..6815)
Genome browser
AA seq
325 aa
AA seq
DB search
MAKVSSRKPPETTAPDPMPTRVEPCVATLAAKPPKGPDWGLEIKWDGYRVALHIKAEHIR
IITRGGYNWTDRFPAIAAEASQLGLQSAILDGEAVVLDEQGRSDFGMLQRALGRRPAAHV
TGQIILFVFDLLYLDGRDLRRLRQGERRRILEAILTGRTGAIRLSEEMDADGDAFLRVAC
AHGLEGIVAKHRGKAYRSGRRPDWLKIKCVRSDSFVIVGFEPSAVSGAIGRLLLAAKKGD
GLVYVGGVGTGFTVRLSQELRKLLDGIKTKAPAVDLKWKNAIFTEPLFVAEIEYRAWTDK
GKLRHASFKGIRERADDATVYSLGE
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagtttcgtcgagaaagcctccggagacgactgcgcccgacccgatgcccact
cgcgtcgagccgtgtgttgcgaccctcgcagccaagccaccaaaagggccggattggggc
ctcgagataaagtgggatggctaccgggtcgctctccatatcaaagcggagcatattcgg
atcatcacgcgcggcggttataattggacggatcgctttccggcgatcgcggcggaggcg
agtcaactcggtctgcagagtgccatcctcgatggcgaagcagttgtgctggatgaacag
ggacgctctgatttcgggatgctgcagcgggcgcttgggcgcaggcccgcagctcacgtc
accggccaaatcatcctctttgtgtttgacctactttatctcgatggcagggatcttcgc
cggcttcgccagggcgagcgccggcggattctcgaagcgatcctaactggtcgcacaggg
gcaatccgtctctcagaggagatggatgcggacggagatgcttttttgcgagtcgcctgc
gcgcatggcctcgagggcatagtcgctaagcatcgcggaaaggcctaccgttccggccgg
cgcccagactggctaaagatcaaatgcgtgcgcagtgacagcttcgtcatcgtcgggttt
gagccgtctgccgtttctggtgcgatcggacgtctgttgctagcggcgaagaagggagac
ggcctggtctatgttggcggcgtcggtactggcttcactgtcaggttatcgcaggagctg
cggaagttgctagacggcatcaagacgaaggcgccggcagtagatctgaaatggaagaac
gccatttttaccgaaccactgttcgtcgcggagatcgaatatcgtgcctggacggacaag
gggaagctacgccatgcgtcgttcaaggggatcagggagcgagcagacgatgcgaccgta
tattctttaggcgagtga
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