Agrobacterium larrymoorei: CFBP5473_04575
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Entry
CFBP5473_04575 CDS
T06268
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP5473_04575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alf03019
]
CFBP5473_04575
Enzymes [BR:
alf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFBP5473_04575
Messenger RNA biogenesis [BR:
alf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBP5473_04575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
HEM4
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCI97256
UniProt:
A0A4D7DSF0
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All DBs
Position
circular:971197..972765
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AA seq
522 aa
AA seq
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MTSFNELGLSEKLVAAVTALGYTTPTPIQQKAIPFLLEGRDVIGLAQTGTGKTAAFGLPI
IEMLMKHGERPANRTTRCLILAPTRELVNQIGESLRAFVRKTPLRINQVVGGASINKQQL
QLEKGPDILVATPGRLLDLIARNAISLSKVTHLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAISELAHSYLTEPAKVEVTPPGKAADKVEQYVHFVGGKNDKTDLLKKS
LTENPDGRAIVFLRTKHGAEKLYKHLEHVGFKVSSIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVADAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIEIPVLSGERPEGLASPTRGSGNRGGRGNGNGNGNGGRRQGGERGERSHGDRPA
RGHREGGREGGHREGGHREGGRRNGDFRGQRAGEFAPVERDNDLEVTSDFKRTKVDGAPA
GKPAGNRNHRGGQGRPARKSGSFAPAGQGRPAGNAGRGRKRG
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttaacgaactcggcctctccgaaaagctcgtggctgctgttacggctctt
ggatatacaactcctactcccattcaacaaaaagccattccatttctgctggaaggccgc
gatgtcatcggccttgcacagacaggcaccggcaagactgccgctttcggcctgccgatc
atcgaaatgctgatgaagcacggcgagcgtccggcaaaccgcacgacgcgctgcctcatc
cttgcgcccacgcgcgagctggtaaaccagatcggcgagagcctgcgcgccttcgttcgc
aagacgcctctgcgcatcaaccaggtcgttggtggcgcatccatcaacaagcagcagctt
cagctggaaaagggcccggatattctggtggccacccccggtcgtctgctggacctgatt
gcccgtaacgcgatttcgctctccaaggtcacgcatctcgtgcttgatgaagccgaccag
atgctggatctcggcttcattcacgatctgcgcaagatttccaagatggtgcctgcaaag
cgccagacgctgcttttctcggccaccatgccgaaggcgatttccgagctcgcgcacagc
tacctgaccgagcctgccaaggtcgaagtcacgcctccgggcaaggctgccgataaggtg
gagcagtatgttcacttcgttggcggcaagaacgacaagacggatctcctgaagaagtcc
ctgacggaaaatcccgatggtcgcgccatcgtcttcctgcgcaccaagcatggtgccgag
aagctctacaagcatctcgagcatgtcggcttcaaggtttcctctatccatggcaacaag
agccagggccagcgcgaacgcgccttgaagggcttcaaggatggtgagatcaaggtgctg
gtggcaacggacgttgccgcgcgcggtatcgatattcccgccgtgacgcacgtcttcaac
tacgatctgccggaagtggcggatgcttatgttcaccgtatcggccgtacagcccgcgca
ggccgtgatggcatcgccatcgcattctgcgccccggacgaaacccgcctgctgcacgat
atcgaaaagctgatgaagatcgaaattcctgtcctctccggcgagcgcccggaaggcctc
gcaagcccgacccgcggcagcggcaatcgcggcggtcgtggaaacggcaatggcaatggc
aatggcggtcgtcgtcagggtggcgagcgcggtgagcgctcccatggcgatcgtccggct
cgtggccacagagaaggtggtcgcgagggcggtcaccgtgaaggcggccatcgtgagggc
ggacgtcgcaacggagatttccgtggccagcgcgccggtgaattcgctcctgtagaacgt
gacaacgatctcgaagtcacgtcggacttcaagcgcaccaaggtcgacggcgcgccagcc
ggaaagcccgccggcaaccgcaatcatcgcggcggccagggtcgcccagcccgcaagtcc
ggctctttcgcaccagccggtcaaggtcgccccgccggcaacgccggtcgcggtcgcaag
cgcggctga
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