Agrobacterium larrymoorei: CFBP5473_05725
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Entry
CFBP5473_05725 CDS
T06268
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03420
Nucleotide excision repair
alf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFBP5473_05725
03430 Mismatch repair
CFBP5473_05725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alf03400
]
CFBP5473_05725
Enzymes [BR:
alf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFBP5473_05725
DNA repair and recombination proteins [BR:
alf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFBP5473_05725
MMR (mismatch excision repair)
Other MMR factors
CFBP5473_05725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF3553
DUF4420
Peptidase_M13
DEAD
Motif
Other DBs
NCBI-ProteinID:
QCI97462
UniProt:
A0A4D7DT68
LinkDB
All DBs
Position
circular:complement(1217631..1220114)
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AA seq
827 aa
AA seq
DB search
MSNSFDDMPFFDEEPNEPRRPAPSAPAAGGQGTPGLGIAARAMAARDQGRAAPDYLSGLN
AEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATNRAYPSQILAVTFTNKAAREMK
ERIGVLVGGAVEGMPWLGTFHSIGVKLLRKHAELVGLKSDFTILDTDDVVRLIKQLIQAE
GLDDKRWPAKQFAGMIDNWKNKGLTPPDIPEGDSRAFANGKGRELYAAYQARLRTLNACD
FGDLLMHPITIFRKHTDILKEYHQKFRYILVDEYQDTNTSQYMWLRLLAQRSKSEPQNVC
CVGDDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLERNYRSTEHILGAAGHLIAHNEGRL
GKTLFTDRVDPNDEKVVVHAAWDSEEEARAVGEEIEQLQRKDHPLNNMAILVRASFQMRE
FEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGDTT
IRNLHDYARARDIPMLAAAADIIETDELKPKARKALFDVVQDFRRWQSLLENTEHTVLAE
QILDESGYTAMWQADKTAEAPGRLENLKELIRSMESFESMRGFLEHVALVMDAEQNEDLD
AVSIMTLHSAKGLEFETVFLPGWEEGLFPHQRSLDEGGRSGLEEERRLAYVGITRAKRRC
HIWFVSNRRIHGLWQSTLPSRFLDELPPSHVEVSASESNFGGYGGRGGYGQSRFDKADPF
TNNYSTPGWKRAQANRSDATRDNWGTRSGHSVERIGYGESGPRTRTIDGELVAKSVADTP
SKFAIGDRVFHLKFGNGNVASVEGNKLTIDFDRAGQKRVLDGFVEKA
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacagtttcgacgatatgccgttcttcgatgaagaaccaaatgagccgcgccgt
ccggctccgagcgcaccggctgccggtggtcaaggtacaccgggcctgggcatcgccgcg
cgtgccatggccgcccgcgaccaggggcgtgcagcgcccgattatctttccggcctcaac
gccgaacagcgcgaagctgtcgaaacgctggatggaccggttctggttctggcgggcgcg
ggcacgggcaagacgcgcgtgttgaccacgcgtatcgcccatattctcgcgaccaaccgc
gcctatcccagccagattctggcagtgaccttcaccaataaagcggcgcgagagatgaag
gagcgtatcggcgttctcgttggcggcgcggtcgaaggcatgccctggctcggcacgttc
cactccatcggcgtcaagctgctgcgcaaacatgcggagctcgtcgggctgaaatcggac
ttcaccattctcgataccgacgatgttgtccgcctcatcaagcagcttattcaggctgaa
ggtctggatgacaagcgctggcctgccaagcagttcgcgggcatgatcgacaactggaag
aataagggtctgacaccgccggatattcccgaaggcgacagccgcgcctttgcaaacggc
aagggacgcgaactttacgccgcctatcaggcccgtttgagaacgctgaatgcctgcgat
ttcggcgatctgcttatgcacccgataaccattttccgcaagcacacggatattctgaag
gagtatcaccagaagttccgttacattctggtggacgagtatcaggacaccaacacctcc
caatatatgtggctgcggcttctggcccagcgctccaaaagcgagccgcagaacgtgtgt
tgcgtgggcgatgacgatcagtccatctatggctggcgcggcgcggaagtggataatatc
ctgcgtttcgacaaggattttcccggcgccaaggtcatcaagctggagcgcaattatcgc
tccaccgaacatattcttggcgctgccgggcacctgatcgcccataatgaaggccgcctc
ggcaagacgctcttcaccgatcgtgtcgatccgaacgatgaaaaagtcgtggtccacgct
gcctgggattcggaagaggaagcccgcgcggtcggcgaagagatcgagcagctgcagcgc
aaggatcatccgctcaacaacatggcgatcctggttcgtgcatctttccagatgcgcgag
ttcgaagatcgcttcgttacgctcggtctgaactaccgcgttatcggcggcccgcgcttc
tatgagcgtctggaaattcgcgacgccatggcctatttccgcctcgtctgccaaccggca
gacgatctggccttcgagcgtatcgtcaacacgccgaagcgcggcctgggcgatacgacg
atccgcaacctgcatgattatgcgcgcgctcgcgatatccccatgctggctgccgccgcc
gatattattgagacggacgagttgaagccgaaagcccgcaaggcgctgttcgacgtggtg
caggatttccgccgctggcagagcctgctggaaaacaccgaacatacggttctggccgaa
cagatactggacgagagcggctacaccgccatgtggcaggcggataagaccgccgaagcg
cccggacgactggaaaacctgaaggaactcatccgctcgatggagagcttcgagagcatg
cgcggctttctcgagcacgtcgcgctcgtgatggatgccgagcagaacgaggatctcgac
gccgtttccatcatgacgctgcactccgccaagggtctggaattcgaaaccgtgtttctg
ccgggctgggaagaaggcctgttcccgcatcagcgctcattggatgaaggcggtcgttcc
ggcctcgaggaagagcgccgcctcgcctatgtcggcatcacgcgtgcgaagcgccgctgc
cacatctggttcgtctcgaaccggcgcatccacggcctgtggcaatccaccctgccctcc
cgcttcctcgatgaactgccgccttcccatgttgaagtctccgcatcggagagcaatttc
ggcggttatggtgggcgcggcggctacggccagtcacgcttcgacaaggcagacccgttc
accaacaactattcgacacctggctggaaacgagcccaggccaaccgctcggatgccacg
cgcgacaattggggcacccgctcaggccactccgtagaacgcatcggctacggcgaaagc
ggcccgcgcacccgcacgatagatggcgaactggtggcaaagtccgtcgccgacaccccg
tcgaaattcgccatcggcgaccgcgtcttccacctgaaattcggcaacggcaacgtggcc
tcggtagaaggcaacaagctgaccatcgatttcgaccgtgccgggcagaagcgggtgctg
gatgggtttgtggaaaaggcgtga
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