Agrobacterium larrymoorei: CFBP5473_06190
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Entry
CFBP5473_06190 CDS
T06268
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFBP5473_06190 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alf03021
]
CFBP5473_06190 (rpoC)
03400 DNA repair and recombination proteins [BR:
alf03400
]
CFBP5473_06190 (rpoC)
Enzymes [BR:
alf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFBP5473_06190 (rpoC)
Transcription machinery [BR:
alf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFBP5473_06190 (rpoC)
DNA repair and recombination proteins [BR:
alf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFBP5473_06190 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QCI97540
UniProt:
A0A4D7DZZ8
LinkDB
All DBs
Position
circular:1318005..1322213
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSDLAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIMNEREPGEGMAFSDMGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIYETTPGRMIIGELLPKNVNVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFTHACRAGISFGKDDMIIPETKVKIVGDTETL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDAETGRQKPMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSRDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDNPVTGENIVKAGKLIDEAEVAIIEKAGIQSVRIRSALTCEIQVGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
SLRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKLFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
AVAKLSRGGEARFQLSVDAILSVEPGQKVFQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVIINDKHIEVIVRQMLQKVE
ITDAGDSHYIVGDSVDRIEMEDNNDRLIEEGKKPAYGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKMDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATTRDDLIIEERKK
STGSASANQMLQDMTDKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaacccgcaggtgcccgcgcagcatttcgattcc
atccggatttcgatcgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagcccgaacgtgacggcctgttctgcgcg
cgcattttcggacctatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgttgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccacatcgagctcgcagcacccgttgcccacatctggttcctgaagtcg
ctgccttcgcgtatctcgaccctgctcgacatgacgctgaaggatgtagagcgcgttctc
tactttgaaaactacatcgtgaccgagcctggcctgacttccctgaagcagaaccagctt
ctgtccgaagaagagtacatgatcgctgtggatgaattcggtgaagaccagttcaccgcc
atgatcggcgccgaagcgatctatgaaatgcttgcttccatgaatcttgagaagattgcg
ggcgacctgcgctccgatctggccgagaccacctcggacctcaagcagaagaagctgatg
aagcgcctgaagatcgttgagaacttcatggaatccggcaaccgcccggaatggatgatc
atgaaggtcgttccagtgatcccgccggacctgcgtccgctggttccgctggatggcggt
cgtttcgcgacgtccgacctgaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgcgcaccgggcatcatcatccgcaacgaaaagcgtatg
ttgcaggaatccgttgacgcgctgttcgacaacggccgtcgcggtcgcgtcatcacgggt
gcgaacaagcgtccgctgaagtcgctctccgatatgctcaagggcaagcagggccgcttc
cgtcagaaccttctcggcaagcgcgtcgactattccggtcgttcggttatcgtgacgggt
cctgagctgaagctgcaccagtgtggccttccgaagaagatggcgctcgaactgttcaag
ccgttcatctatgcccgcctcgacgcgaagggttactcctccaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttcttttgaaccgcgcgccgacgctgcaccgtctgggcatccaggctttcgaa
cctacgctggtcgaaggcaaggctatccagctgcatccgctcgtctgcacggccttcaat
gccgacttcgacggtgaccagatggctgttcacgttccgctgtcgctggaagcgcagctg
gaagcacgcgtgctgatgatgtcgaccaacaacatcctgcaccctgcaaacggccagccg
atcatcgttccttcgcaggacatggttctcggtctttactacctctcgatcatgaacgag
cgcgagcccggcgaaggcatggctttctccgacatgggcgagctgcatcatgctctggaa
aacaaggtcgtgacgctgcacgcgaaaattcgtggccgcttcaagaccgtcgatgccgat
ggcaagcctgtttcgaagatctatgaaacgacccccggtcgtatgatcatcggcgagctt
ctgccgaagaatgtcaacgtgccgttcgagacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaggacacggtcattttc
tgtgaccgcatcatgcagcttggcttcacgcatgcctgccgcgccggcatttcgttcggc
aaggacgacatgatcattcctgaaaccaaggtgaagatcgttggcgacaccgaaacgctg
gtcaaggaatacgagcagcagtacaatgacggcctgatcactcagggcgaaaagtacaac
aaggtcgttgacgcctggggcaaggcaaccgagaaggtcgctgaagacatgatggcccgc
attaaggctgtcgagttcgacgctgagaccggtcgtcagaagccgatgaacgccatctac
atgatgtcccactccggcgcgcgtggttctccgaaccagatgcgtcagctgggtggtatg
cgcggcctcatggccaagccatcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctt
gcagacaccgccttgaagacggctaactccggttacctgacgcgtcgtctcgttgacgtg
gcacaggactgcatcgtcaattctcgtgattgcggcaccgacaagggcctcaccatgact
gccatcgtcgatgccggtcaggtcgttgcttcgctcggcgcacgtattctcggtcgtacg
gctctggacgacatcgacaacccggtcactggcgagaacatcgtcaaggctggcaagctg
atcgatgaagccgaagtcgcgatcatcgaaaaggctggcattcagtccgttcgcatccgt
tcggctctgacctgcgaaatccaggtcggtgtctgcggcgtctgctacggtcgtgacctt
gcacgcggtacgcctgtcaacatgggtgaagctgtcggcgttatcgccgctcagtccatc
ggtgagccgggcacgcagctgaccatgcgcacgttccaccttggcggcacggccaacgtg
gttgaccagtcgttccttgaagcatcgtatgaaggtacgattcagatcaagaaccgcaac
agcctgcggaattccgaaggcgttctcatcgcgatgggccgtaacatgtcggtcaccatt
ctcgatgagcgcggcgtagagcgttcctcgcagcgtgtcgcttacggctccaagctgttc
gtggacgatggcgacaaggtgaagcgcggtcagcgtcttgcagagtgggacccttacacc
cgtccaatgatgacggaagtggaaggtacggttcacttcgaagatctggtcgatggtctc
tccgttctcgaagcgaccgacgaatccaccggtatcaccaagcgtcaggttatcgactgg
cgttcgacaccgcgtggttcggacctgaagcctgcaatcgtcatcaaggatgcttccggc
gctgttgccaagctgtcccgtggcggcgaagctcgcttccagctgtcggtggatgcaatt
ctgtcggtcgagcccggtcaaaaggtcttccagggtgacgttcttgcacgttcgccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactcttcgaa
gcgcgtcgtccgaaggatcacgctatcatcgccgaaatcgatggtacgatccgtctgggc
cgcgactacaagaacaagcgccgcgtgatgatcgagcctgcggaagatggcgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactacatcgag
aagggtgaatacattctcgacggcaacccggcaccgcacgacattctggcgatcaagggc
gtggaggcactcgcttcctacctcgtgaacgaaatccaggaagtttaccgtctgcagggc
gttatcatcaacgacaagcacatcgaagttatcgttcgtcagatgttgcagaaggtggaa
atcaccgacgcaggcgacagccattacatcgtcggcgacagcgtcgatcgcatcgagatg
gaagacaacaacgaccgtctgatcgaagaaggcaagaagcctgcctatggcgaaccggtt
ctgctcggtatcaccaaggcatcgctccagacgccgtccttcatctcggctgcttcgttc
caggaaaccaccaaggtcctgaccgaagctgcaattgccggcaagatggacacgttgcag
ggcctcaaggaaaacgtcatcgtcggccgcctcatcccggctggtaccggcggcaccatg
acgcagatccgccgcatcgcgacgacccgcgacgacctcatcatcgaggagcgcaagaag
agcaccggctctgcttccgccaaccagatgctgcaggacatgacggacaaggctcctgct
gccgaataa
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integrated database retrieval system
