Agrobacterium larrymoorei: CFBP5473_07295
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Entry
CFBP5473_07295 CDS
T06268
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP5473_07295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alf03019
]
CFBP5473_07295
03009 Ribosome biogenesis [BR:
alf03009
]
CFBP5473_07295
Enzymes [BR:
alf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFBP5473_07295
Messenger RNA biogenesis [BR:
alf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFBP5473_07295
Ribosome biogenesis [BR:
alf03009
]
Prokaryotic type
rRNA processing factors
CFBP5473_07295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
zf-C2H2_10
Motif
Other DBs
NCBI-ProteinID:
QCI97732
UniProt:
A0A4D7DU54
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All DBs
Position
circular:complement(1540204..1543122)
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AA seq
972 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEHRRGDDFEPADAPHEPAIDLSQVD
QPDIGIVPASEPKAEETASTEVVAASEEAETVAVEAVADEQPAEEEKPKKRTRRPRAKKK
VEADEASAEAAAEDASDEDGSKGGEMAAMVDTDTISEEVEGLGRNNDDDDDDDDDDHHEK
EVIESVGAEDAMEEVPDRISRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITQPADRKRLKEIARDLEVPNGMGVILRTAGANRTRVEI
KRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREA
KDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVS
IDVNSGRSTREHSIEETALATNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEK
KLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQICSHCGGTGHVRSESSIAL
HVLRGVEEYLLRNTTHNITVRTTPETALYLLNHKRGTIVDYEGRFGVAIIIAADASVGAQ
HFAIDRGEAVENPVRIESLLQALPDFEEEEDDIVIEADEEEDEEELVKAQSSEPRQQQGE
NGEDGKRKRKRRRRRRGKGNGQNGDAQADANDEDSAEGSDEDGDDSSDEQAEGAEVRAEG
ENGAQDEGKRKRRRRGKRGGRRNRDENGETLEGENGDADEGIEDGEAAAAVEGVEPVAAV
EAVEAEAATPTVEETEKPKKPRRTRKAKEKVETATEATAEVEAPTAEPVPAPQEAPVAEA
LAAAAPAEQAAEAPAEAATDTAEDATKPARANRGENVSSSEPVVTSSGAGDTPEGEEPKP
RKGGWWQRKGFF
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcctcccacgaagaggagacgcgcgttgtagtcgtt
cgcggaaatcggatcgaagaattcgatttcgaatcggaacacaagaagcagatacgcggc
aatatctaccttgccaaagttacccgcgttgaaccctcgcttcaggctgctttcgtagac
tacggcggaaaccgccacggatttctggctttcgccgaaatccatccggattattaccag
atcccgcttgccgaccggcaggcacttctgaaggcggaagccgaagagcaccgtcgcggt
gatgacttcgagcccgccgatgcgccgcatgaacccgctatcgatctctcgcaggtcgat
cagccggatatcggcatcgttcccgcttccgagccaaaggctgaagaaacggcgtctacc
gaggtcgtcgcagcttccgaggaagccgagacagtggctgtcgaggccgttgccgacgag
cagcctgcggaagaagaaaagccgaaaaagcgcacccgccgcccccgcgccaagaagaag
gttgaagcggacgaggcctccgcagaagccgcagccgaagatgcttccgacgaggatggc
agcaagggcggcgaaatggctgccatggtcgataccgatacgatttccgaagaagtcgaa
ggtctgggccgcaataatgacgatgatgacgacgatgatgatgacgatcatcacgagaag
gaagtcatcgaatccgttggcgcggaagatgcgatggaagaagttccagaccgcatttct
cgcaagccacgcaagcagtatcgtattcaggaagtcatcaagcgccgccagattcttctg
gttcaggttgccaaggaagagcgcggcaacaagggcgcagcactgacgacctatctgtcc
ctcgctggccgctactccgttctcatgccgaacacggcgcgtggcggtggcatttcccgc
aagatcacccagcccgccgaccgcaagcgcctgaaggagatcgcccgcgatctcgaagtg
ccgaacggcatgggcgtcattttgcgcacggccggtgcaaaccgcacccgcgtcgaaatc
aagcgcgacttcgaatatctgatgcgcctgtgggaaaatgtccgcacgctaacgctgaat
tctacggccccttgcctcgtttacgaggaaggctcgctgatcaagcgctcgatccgcgat
ctctacaataaggacatcagcgaaatcatcgtgtctggcgaggaaggctatcgtgaagcg
aaagacttcatgaagatgctgatgccgagccacgccaaggtggttcagccttaccgcgac
attcatccgatcttctcgcgctccggcatcgaagcgcagctggaccgcatgcttcagccg
caggtgaccctgaagtccggtggttatctcatcatcaaccagacggaagctctcgtttcc
atcgacgtcaactcaggtcgctcgacgcgcgaacactccatcgaggaaaccgcgctcgca
acgaacctcgaggcggcggaagaagttgcccgccagcttcgcctgcgcgatctggccggt
ctggtcgtcatcgacttcatcgacatggaagaaaagcgcaataaccgctccgtcgagaag
aagctgaaggattgcctgaagaacgaccgtgcccgcattcaggttggccgcatctcacat
ttcggcctgctggagatgtcgcgtcagcgtattcgcgcttcggttctggaatccacgacg
caaatctgctcgcattgcggcggcacgggccatgttcgctccgaatcctccatcgccctg
catgttctgcgcggcgtggaagaatatctgctgcgcaacaccacgcataatatcacggtg
cgcacgacacctgaaacggcgctctacctgctcaaccacaagcgcggcacgattgtcgat
tatgaaggccgcttcggcgtcgccatcatcatcgctgccgatgcaagcgtaggcgcgcag
cacttcgccatcgaccgcggtgaagccgttgaaaaccccgtaaggatcgaaagccttctt
caggcccttcccgatttcgaggaagaagaggacgatatcgtcatcgaggccgatgaggag
gaggacgaggaagaactggttaaggctcagtccagcgagccgcgccagcagcagggcgaa
aatggcgaagacggcaagcgcaagcgcaagcgtcgccgccgccgtcgcggcaagggcaac
ggccagaacggtgacgctcaggcggatgccaatgacgaagacagcgccgaaggctctgac
gaagacggcgacgacagcagcgatgagcaggctgaaggcgcggaagttcgcgccgagggt
gaaaacggcgctcaggacgaaggcaagcgcaagcgccgccgtcgtggcaagcgcggtggt
cgccgcaatcgcgacgaaaacggcgaaacgctggaaggcgaaaacggcgatgctgacgaa
ggcatcgaagacggcgaagctgctgctgcagtagaaggcgtcgaaccggtagctgccgtt
gaggcggttgaggccgaagcggcaacgccgactgtcgaagaaaccgaaaagccgaagaag
ccgcgccgcacccgcaaggcgaaggaaaaggtagaaacagcaaccgaagcaacggcggaa
gtcgaagcaccgacagctgaacccgtacccgcacctcaggaagctccggtcgcagaagca
cttgcggcagcagctcctgccgagcaggccgctgaagccccagccgaagccgcaacggat
acagcagaagacgccacaaagcccgctcgcgccaaccgcggcgaaaacgtctcctcctcc
gaacccgtcgttacctcctccggcgcaggcgataccccggaaggcgaagaaccaaaaccc
cgcaagggtggctggtggcagcgcaagggctttttctaa
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