Agrobacterium larrymoorei: CFBP5473_09060
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Entry
CFBP5473_09060 CDS
T06268
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP5473_09060 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alf03019
]
CFBP5473_09060 (rnr)
03016 Transfer RNA biogenesis [BR:
alf03016
]
CFBP5473_09060 (rnr)
Enzymes [BR:
alf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFBP5473_09060 (rnr)
Messenger RNA biogenesis [BR:
alf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFBP5473_09060 (rnr)
Transfer RNA biogenesis [BR:
alf03016
]
Prokaryotic type
tRNA degradation factors
CFBP5473_09060 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
OB_RNB
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
QCI98045
UniProt:
A0A4D7DMF8
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All DBs
Position
circular:1895559..1897913
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AA seq
784 aa
AA seq
DB search
MSKAPRQKQNSANDGFGRTARSKRVNEGEGIIHGEVPPREVLLKFIAEHPQQASKREIAK
AFGLKGDDRVVLKALLKELETDGMVQKNRKSLMRPGGLPPVTVLDITTRDKDGELIGRPA
EWPDDQGAAPAVLIRQTSQDRGKKAPAVGLNDRILAKIFPSKDRVGPAYTARVIKIIDRR
QNALLGVFRLSPGGGGRLMPIDRRGEELVIDPEGVNDAKDGDLIEVDVSRNSGRYGLKRA
SVLSVIGSVASEKAISMIAIYAHGIPHIFPQNVLAEADDAKPASMSHREDWRDLPLITID
PADAKDHDDAVYAEPDPSPDNPDGVIVTVAIADVSYYVRSGSPLDREALKRGNSVYFPDR
VVPMLPERISNDLCSLKEGVDRPAIAVRMVFSKEGRKASHTFHRIMMKSAAKLSYQQAQA
AIDGKPDDKTGPLLEPILKPLWHAYEIMKRGRDRRQPLELDMPERKILLRSDGTVDQVII
PERLDAHKLIEEMMIQANVAAAETLEKKKQPLIYRIHDAPTLAKQETLREFLATLSISMA
KGGQVRANSFNGILARAVDTPHQIMVNEMVLRSQSQAIYSPENIGHFGLNLLKYAHFTSP
IRRYADLIVHRALVGSLGLGEGGITPQEEATLDDIAAEISTFERRAMAAERDTINRLIAH
HLSERVGEEFEGRVGGVTKAGLFVALPQFGADGFVPISTLGMDYFIYDEAHQALTGEKTG
LGYQLGDTVQVRLAEAVPLAGALRFEILSEGRKMPAATRSFHKATRKGGRNTAKPGTRPP
RKRR
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagcgccgcgtcagaaacagaattccgcaaatgacggtttcggacgcaccgcc
cgctcgaagcgtgtgaacgagggcgaaggcattatccatggcgaggtgcctccccgcgaa
gtgcttttgaagttcattgccgaacacccgcagcaggcatccaagcgcgaaattgccaag
gctttcggcctcaagggcgatgatcgcgtggtgcttaaagcactgctgaaggaactcgaa
accgatggcatggtgcagaagaaccgcaagtcgctgatgcgcccgggcggtctgccgcct
gtcacggttctcgatatcacaacccgtgacaaggatggcgaactgatcggtcggcctgcg
gaatggccggatgatcagggtgccgcacccgccgttctcatccgccagacctcgcaggat
cgcggcaagaaggcgcctgccgtcggcctcaacgaccgcattctggcaaagatctttccg
tccaaggaccgcgtcggaccggcctatacggcccgcgtcatcaagatcatcgaccgtcgc
cagaacgcgcttctcggcgtgttcagactttcgcccggcggcggtggccgtctgatgccg
atcgatcggcgcggcgaggaactggtcatcgatccggaaggcgtcaatgatgcgaaggac
ggagacctgatcgaggtcgacgtatcgcgcaacagcggacgctacggcctgaagcgcgca
agcgtgctttccgtcatcggctccgtggcctcggaaaaggcgatctcgatgatcgccatc
tatgcgcacggcattccgcatatcttcccgcagaatgttctggcggaagcggatgacgca
aagcctgcaagcatgtcgcaccgtgaagactggcgcgacctgccgctgatcaccatcgat
ccggcggacgccaaggaccatgacgatgcggtttatgccgaacccgacccgtcgccggat
aacccggatggcgtgatcgtcaccgtcgccattgccgatgtgtcttattatgtccgatcc
ggttcgccgctggatcgcgaagcgctgaagcgtggcaactcggtctatttcccggatcgc
gtcgtgcccatgctgcccgagcgcatctccaacgatctctgctcgttgaaagaaggcgtg
gaccgccctgccattgccgttcgcatggtgttttccaaggaaggtcgcaaggcctcccac
accttccaccgcatcatgatgaagagcgccgcaaagctctcctaccagcaggcgcaggcc
gccatcgacggcaagccggatgacaagaccggaccattgctggagccgatcctgaagccc
ctgtggcatgcttatgagatcatgaagcgcgggcgggatcgtcgccagccgcttgaactc
gacatgccggagcgaaagattctactgcgttccgatggcacggtggatcaggtcatcatt
cccgaacgtctcgatgcgcataagctcatcgaagaaatgatgattcaggcgaacgttgct
gcggcggaaacgctggaaaagaagaagcagccgctgatctatcgcatccacgatgcgccg
acgcttgccaagcaagaaacgctgcgcgagtttctggcaacgctcagcatttccatggcc
aagggtgggcaggttcgcgccaactccttcaatggtattctggcccgcgccgtcgatacg
ccgcaccagatcatggtcaacgagatggtgctgcgctcgcaaagccaggcgatctacagc
ccggaaaatatcggccatttcggcctgaacctgttgaaatacgcccacttcacctctccg
atccgtcgctatgccgatttgatcgtgcaccgtgcgctcgttggttcgctgggtctgggc
gaaggcggcatcacgccgcaggaagaagcgacgctggacgatatcgccgctgaaatctcg
actttcgagcgtcgcgcaatggcggcggagcgtgacacgatcaaccgcctgatcgcccac
catctctccgagcgtgtgggcgaggaattcgaaggccgagtcggcggtgtcaccaaggcg
ggactatttgtcgcgcttccgcagtttggcgcggacggtttcgttcctatatctacgctt
ggaatggattacttcatctatgacgaggcccatcaggctttgacgggtgaaaagaccggc
ctcggttatcagctcggcgacacggttcaggttcgcttggcggaagccgtgccgctggca
ggcgcacttcgcttcgagatattgagcgaaggccgcaagatgccggcagccacgaggtcg
ttccacaaggcaacgcgcaagggcgggcgcaacacggcgaaaccggggacaaggcctcca
cgcaagagacggtag
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integrated database retrieval system
