Agrobacterium larrymoorei: CFBP5473_09125
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Entry
CFBP5473_09125 CDS
T06268
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03030
DNA replication
alf03430
Mismatch repair
alf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFBP5473_09125 (dnaE)
03430 Mismatch repair
CFBP5473_09125 (dnaE)
03440 Homologous recombination
CFBP5473_09125 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alf03032
]
CFBP5473_09125 (dnaE)
03400 DNA repair and recombination proteins [BR:
alf03400
]
CFBP5473_09125 (dnaE)
Enzymes [BR:
alf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CFBP5473_09125 (dnaE)
DNA replication proteins [BR:
alf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CFBP5473_09125 (dnaE)
DNA repair and recombination proteins [BR:
alf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CFBP5473_09125 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
QCI98056
UniProt:
A0A4D7DUS7
LinkDB
All DBs
Position
circular:complement(1906927..1910424)
Genome browser
AA seq
1165 aa
AA seq
DB search
MSDTLAGQDVSGTIMKSPGFVHLRVHSAYSLLEGALPLKKIMAKAVSDAQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQVSIDMQDATDDKRGHNNLSKLPAIVLLAADAAGYERL
VDLISRAYLDGEGSGHSVNISKSWLEEASNEGLIALTGASGGPVDMAIREGHAAQATARL
LALRNLFGDRLYIELQRQGNYDRAHERRMIALAYEHDIPLVATNEAFFPSKADYEAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRDEMISLFKDIPEAIENTIEIAQRCSYVLKKRGPI
LPRFTGASDDPEEAERAESLELRRQAVEGLDQRLAALGMAPGYTEQEYRERLDFELSVIE
RMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDRICKLVPNNPANPTPLSKAIEEEPRFQEEIDKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDF
VAKRNIHVDLASIPLDDPKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVA
LYRPGPMENIPVYNARKHGDEEIESIHPTIDYLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKEEMDQQRERFVDGAMKNGVSKAQSDMIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKVNDFRQDAARLGIEIVAPSVQTSFRRF
ETGENRIYYSLAALKGVGEGAVDHIVDVRGDKPFSSLEDFCLRIDPKQINRRVLESLINA
GAFDCFCKDRAELIGGLDRIIGYSQRAQESRVTGQHDMFGSGAATGPEKLVLPAYQPWLA
SEKLLREYQVLGFYLTAHPLDTYRNVLDKLRVQNISDFSAAVKQGATAGRLAGTVTGKQE
RKTRTGNKMGIVTFSDASGQYEAVLFSEGLGQYRDLLEVGKSLVITVQAEERPEGIGLRI
QTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTRGDGSVYFVVIKDEGQREIEVELT
EKYRISPEIAAALRSAPGVIDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacactttggcgggacaggacgtttcgggcaccatcatgaaatcgcccggcttc
gtccatctgcgggttcactccgcttattccctgctcgagggcgcgctgcccttgaagaag
atcatggccaaggctgtcagcgatgcacagcccgccatagcgattaccgatacgaataat
cttttcgtcgcgctggaattttccgaaaaggcgcgggatgaaggcttgcagcccatcatc
ggctgccaggtctccatcgacatgcaggatgccaccgacgataagcgggggcataacaac
ctgtccaagttgcctgccatcgtgcttctggctgcggatgctgccgggtatgagcggctg
gtcgatcttataagccgtgcttatctcgacggagaaggcagcggccattcggtcaatatt
tccaaatcctggcttgaagaggctagcaatgaaggactgatcgcactcaccggcgcatcc
ggtggccctgtcgatatggccatcagggaaggccatgcggcgcaggcaaccgcacggctg
ctcgccctcaggaaccttttcggcgacaggctttacatagagctacagcggcagggcaat
tatgaccgcgcgcatgagcgccggatgattgcgcttgcctacgagcacgacattccgctt
gtcgccaccaacgaagccttctttccctcgaaggcggattatgaggcacatgacgccctg
atggccgtggcgcataatgccatcgtgtccgatgacagccggttccgcttgacgcccgac
cactatctgaaaagccgcgatgagatgatatcgctgttcaaggatattcccgaggccatc
gaaaatacgatcgagattgcgcagcgctgctcctatgtgctgaagaagcgcgggccgatc
ctgccgcgcttcaccggcgccagcgatgatccggaggaagcggaacgcgccgagtcgctg
gagcttcggcgacaggccgtggaaggtctcgatcaacgccttgccgcactcggcatggca
ccgggctatacggaacaggaatatcgcgagcggctggatttcgaactcagcgttatcgag
cgcatgaagtttccgggctacttcctcatcgttgccgacttcatcaaatgggccaagcag
cacgatattccggtcggccccggtcgtggttccggtgcaggctcgctggttgcctatgcc
ctgacgattaccgacgtcgatccgctgcgcttctcgcttctcttcgaacgcttcctcaac
ccggaacgcgtttcgatgccggatttcgatatcgatttctgtcaggaccgccgcgaagag
gtcattcgctacgtgcagcggaaatacgggcgcgagcaggtggcgcagatcatcaccttc
ggttcgctgcaggcgcgtgcggctcttcgtgacgtgggtcgcgtgctggaaatgccctac
gggcaggtggaccgcatctgtaagctcgtcccgaataatccggccaacccgacgccgctt
tcgaaagccatcgaagaagagccgcgttttcaggaagagatagacaaggagccggtcgtt
gcccggcttctggatatcgcccagaagatcgaggggctctaccgtcacgcctccacgcac
gccgccggtatcgtcatcggcgaccgaccgctatcgaagctcgtgccgatgtatcgcgat
ccgcgttcggacatgccggttacgcagttcaacatgaaatgggtggaaagcgccggtctc
gtaaagttcgactttctcggtctgaagacgctgacggtgcttaaggtcgccgtcgatttc
gttgccaagcgcaacatccatgtcgatctcgcctccatcccgctggacgatccgaagacc
tacgagatgctctcgcgcggtgaaaccatcggcgtgttccaggtggaaagtgcgggcatg
cgcaaggcgctgatcggcatgcgcccggactgtatcgaggacatcatcgcgcttgttgcg
ctttatcgtccgggcccgatggagaacatcccggtctataatgcccgcaagcatggcgac
gaagaaatcgaatccattcatccgacgatcgactacctgctgaaggagacgcagggcgtt
atcgtttatcaggaacaggtgatgcagatcgcccaggtcctgtccggttattcgcttggt
gaagccgatcttctgcgccgcgccatgggtaagaagatcaaggaggagatggaccagcag
cgtgaacgtttcgttgacggtgcgatgaagaacggcgtgtccaaggcccagtcggacatg
attttcgatctgctggccaagttcgctaattacggcttcaacaagtcgcatgccgccgcc
tacgctattgtgtcctaccagaccgcctatatgaaggcgcattatccggtcgaattcctc
gccgcgtccatgacgctggatatggcgaatacggaaaaggtgaacgacttccggcaggat
gcggcgcgcctcggcatcgagatcgtggcaccttcggtgcagacgtccttccgccgcttc
gagacgggcgagaaccgcatctattattcgctcgccgctttaaagggcgttggcgaaggg
gcggtggaccacatcgtggacgtgcgcggcgataagccgttttcgagccttgaagatttc
tgcctgcggatcgatcccaagcagatcaaccgccgtgttctggaaagccttatcaatgcc
ggagccttcgattgcttctgcaaggatcgcgcggaactgatcggtggtctggaccggatc
atcggctattcgcaacgcgcgcaggaaagccgcgttaccgggcagcatgatatgttcggt
tccggtgccgcaaccggcccggaaaagctggtgctgcctgcctaccagccgtggctcgcc
tcggaaaagctgttgcgggaatatcaggtgctcggcttctatctaacggcccacccgctc
gacacttatcgcaacgtgctcgacaagctgcgcgtccagaatatctcggatttctcagcg
gcagtgaaacagggcgccactgccggtcgtctggcggggaccgtaacgggtaaacaggag
cgcaagacccgcaccggcaacaagatgggcatcgtcaccttctcggacgcatccggtcag
tatgaagccgtgctgttttcggaaggtctggggcagtatcgtgatctgctggaagtcggc
aaatcgctcgtcattaccgttcaggcggaagagcgaccggagggtatcggacttcgcatc
cagacagcgcaatctctggaggagaagtcggtgcagatgcagaaggctctgcgggtttat
gttcgcgattccgggcctctcaaaaccgttgcccggcatctcaacaccagaggtgatggc
tcggtttacttcgttgtcataaaggatgaggggcaacgcgaaatcgaggtcgaactgacg
gagaaatacaggatttcgccggaaatagcagcggcgctgcgctctgctcccggcgttatc
gatgtcgaactggtctga
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