Agrobacterium larrymoorei: CFBP5473_14290
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Entry
CFBP5473_14290 CDS
T06268
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
alf
Agrobacterium larrymoorei
Pathway
alf02020
Two-component system
alf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CFBP5473_14290 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFBP5473_14290 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alf03021
]
CFBP5473_14290 (rpoN)
Transcription machinery [BR:
alf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFBP5473_14290 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QCI98960
UniProt:
A0A4D7E2P2
LinkDB
All DBs
Position
circular:2955298..2956842
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AA seq
514 aa
AA seq
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MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHIELTQFIAQEVEKNPLLELVANDSEIGG
GMPAGDDGFDSQTSEQTPASEPAERDEWYGDNAPTLNEPLDTNFENVFQDDGAERKADAP
ELLGQWKSMPGGEASEGYDLDDFVAGKPSLHDHISQQIPFSITGPAERAVADALLDHLDE
TGYIATDAVAEISERLSAPSRDVERILATLQGFDPPGVFARSLSECLSIQLAQKDRLDPA
MRTFVSNLELLAKRDFATLKKLCGVDEEDLLDMLAEIRSLNPRPGAGFETGISETIVPDI
VVRPSVEGGWLVELNPETLPRVLVNQSYFAEISRLKPRAGEDGEFLSECMQTANWLTRSL
DQRAKTIMKVASEIVRQQDAFLLHGVDHLRPLNLKQVADAIKMHESTVSRVTSRKYMLTP
RGVFELKYFFSVSIGSVEGGDNHSAEAVRHRIRTMIAQEAPDAVLSDDDIVDILKKNGVD
LARRTVAKYREAMNIPSSVQRRREKKAQARVAAV
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcagccagcctgttgctgcgtcaaaaccagtcacttgtgatgactccacag
ctgatgcagtcgatccagctgcttcagatgacgcatattgagctgacgcaatttatcgca
caggaagtcgaaaagaatccgctgctcgaattagtggcaaacgacagcgaaataggcggc
ggaatgcccgctggcgatgacggtttcgattctcaaacttccgaacagaccccagcgtcc
gagcccgccgagcgtgacgaatggtatggcgacaatgcccctaccctcaacgaaccgctg
gatacgaatttcgagaacgtctttcaggatgacggtgccgagcggaaagcggatgcgccg
gagcttcttggccaatggaaatccatgccgggcggcgaagcctcggagggctacgatctg
gatgatttcgtggctggcaaaccaagcctgcacgatcacatctcccagcaaattcccttc
tccattaccggccctgccgagcgcgctgttgcggatgcgcttctcgatcacctcgatgag
accggctacattgccaccgatgccgttgctgaaatttccgagagattgtcagcgccttca
agggatgtagagcgcattctcgccacactacagggcttcgatccacccggcgttttcgcg
cgctctttgagcgaatgtctgtcgatccagctggcgcagaaggatcggctcgatccggca
atgcggaccttcgtgtctaatctggaacttctggccaagcgcgattttgcgacgctgaag
aagctgtgcggcgtggatgaggaagatctgctcgatatgctcgcggaaatccgcagcctc
aatcctcgcccgggcgcaggcttcgagaccggaatatccgaaaccatcgtgccggatatc
gtcgtgcgcccttccgttgagggcgggtggctggtggagcttaatcccgaaacgctaccg
cgcgttctggtgaaccagagctacttcgccgagatttccaggctgaagccgcgtgcgggg
gaagatggcgaatttctttccgaatgtatgcagacggccaactggctgacgcgcagcctc
gatcaacgggcgaaaacgatcatgaaggtggcaagcgagatcgttcgccagcaggatgcc
ttcctgctccatggcgtggaccatctgcgcccgctcaatctcaagcaggttgccgacgcg
atcaagatgcatgaatccaccgtcagccgtgtgacgtcgcgaaaatatatgctgacgccg
cgtggtgtgttcgaactaaaatacttcttcagcgtgtccattggttcagtcgaaggggga
gacaaccactcggcggaggcagtgcgccatcgtatccgtaccatgatcgcacaggaagca
cccgatgcggtgctttccgatgacgatatcgttgatattctgaagaaaaatggcgtggat
ctggcgcggcgaaccgtcgcaaaatatcgtgaagccatgaatattccctcctccgttcag
cgccgcagagagaaaaaagcgcaggcccgcgtggcggccgtgtga
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