Agrobacterium larrymoorei: CFBP5473_19675
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Entry
CFBP5473_19675 CDS
T06268
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFBP5473_19675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alf03400
]
CFBP5473_19675 (ligD)
Enzymes [BR:
alf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFBP5473_19675 (ligD)
DNA repair and recombination proteins [BR:
alf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFBP5473_19675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Ripply
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QCJ00150
UniProt:
A0A4D7DZ12
LinkDB
All DBs
Position
linear:complement(1169507..1171984)
Genome browser
AA seq
825 aa
AA seq
DB search
MGLQAYNQKRRFDKTPEPKGEAAGSSGNSFVVQKHDARRLHYDFRLEMDGVLKSWAVTKG
PSLDPNEKRLAVHVEDHPLSYADFEGIIPKGQYGGGTVIVWDRGTWSPIGDVKKAYRKGH
LEFELDGEKLKGRWHLVRMKGKAEEKRENWLLIKAHDDEASDTSDIIEEAANSVKTGRSL
EDVAKNPQDTWNSKETSAKSKPPVKAEKQVHDFPKGSRKASMPSFIKPALATLKNNAPEG
TRWLHEIKFDGYRIQARIEKGEVVLLTRSGLDWTEKFGDAIREAFTRLPVETAIIDGELV
VEKENGVSDFSALQADLSNGKSDRFRYYAFDLIYLDGRDLQSAELLERKALLEKLLPSDD
PVLYYSAHFQEEGDRVLQHACTLGLEGVISKVANSKYVSGRKGQWIKSKCSSGQEFVIGG
YTLSSASDQAIGSLALGVYEGGKLRHVGRVGTGFTAETSEQIFDRLKPLSQEESPFSKKL
TALARRGLHYVKPELVAQVEFRGWSGDGNLRHASFQGLREDKAPEEIRKEVENVTETEKP
QTSVKFTHPERLYWPEEKITKADLAEYYAEVWEHIEPYITNRALSLLRCPEGIDGQTFFQ
KHPWRGMNKAIGAIKDPKDRHGEPLVVIKDFDGMMALVQSAVLEIHPWGSTTKSWEKPDM
ITMDLDPADDVPWPAVVEAAFDLKSRLEALGLAAFVKTSGGKGLHVVTPLEPKASWAKVK
GFAKKLATDMAKAEPDKYLAVATKAKRNGRIFVDYLRNGRGSTAVAPYSTRARAGAAVSM
PLEWSELSDIAGPAEFTIKNTPNRLKALKTDPWAKFFASAKPLPG
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgcaagcctacaaccagaagcgccgtttcgacaaaaccccggagccgaaaggt
gaggcggcgggcagttccggcaacagtttcgtggtacagaagcatgatgcgcgaaggctt
cattatgatttccgccttgagatggacggcgttctgaaaagctgggcggtgacgaaggga
ccgagcctggacccgaacgaaaagcgcctcgcagtccatgtcgaagaccatccgctgagc
tatgcggatttcgagggcatcattcccaagggccaatatggcggcggcaccgtgatcgtc
tgggatcgcggtacatggtctcccatcggcgatgtgaaaaaggcctatcggaagggccat
ctggaattcgagcttgacggcgaaaagctgaagggccgctggcatctggtgcggatgaag
ggcaaggcggaggagaagcgcgagaactggcttctgatcaaggcgcatgacgatgaagcc
agcgatacgagcgacatcatcgaggaggccgccaattcggtaaagaccggcagaagcctg
gaggatgtggcgaagaaccctcaggatacatggaattcgaaggagacatcggccaagagc
aaacctccggtcaaagccgaaaagcaggtgcatgattttccgaaaggaagccgcaaggcc
tccatgccgtctttcatcaaacctgctcttgccaccctgaaaaacaacgcccccgaaggg
acccgctggctgcacgaaatcaagttcgatggctatcgcattcaggcgaggatcgagaaa
ggcgaggtcgtgttgctgacccgcagcggcctcgattggacggagaaattcggcgatgca
atccgcgaggccttcacccggctacctgtcgagacggcgatcatcgacggcgaactggtt
gtcgagaaagagaatggcgtttccgatttctccgctcttcaggctgatttgagcaacggg
aaaagcgatcgctttcgctactacgccttcgatctgatctatctggatggccgcgatttg
cagagtgccgagctgctggagcgcaaggcgctgctggaaaagctgcttccgtccgatgat
cccgttctttactatagcgctcattttcaggaagagggcgaccgcgtgcttcagcatgcc
tgcacgcttgggctggaaggcgtcatctccaaggtggcgaattcgaaatatgtttccggg
cgcaagggccagtggatcaaatccaagtgcagcagcggccaggaattcgtcattggcggt
tacaccctctcctcggcatcggatcaggcaatcggctcgcttgcgcttggtgtttatgaa
ggtggcaagctgcgccatgtcggtcgcgtcggcaccggctttaccgcagagacttccgag
cagattttcgacaggctgaagccgctcagccaagaggaaagtccgttctcaaaaaagctg
acagcgctcgcgcggaggggtctgcactacgtcaaaccggaactggtggcgcaggtggag
tttcgcggttggtcaggcgacggcaacctccgccacgcctcttttcaggggttgcgcgag
gacaaggccccggaggaaatccgaaaagaggttgagaacgtgaccgaaacggaaaagccg
caaacgagcgtgaaatttacgcatcctgaaaggctctactggcccgaagaaaagatcacc
aaggcggatcttgcggaatactatgccgaggtctgggaacacatcgagccctacatcacc
aaccgcgcgctttcattgctgcgctgcccggagggcatcgacgggcagacgttttttcag
aagcacccgtggcggggcatgaacaaggccatcggcgcgataaaggacccgaaggacagg
cacggcgaacctctggtggtgatcaaggatttcgatggcatgatggcattggtgcagtct
gccgtgctggaaatacacccatggggctccaccaccaaatcctgggaaaagccggatatg
atcaccatggatctcgatcccgctgacgatgtgccgtggcctgcggtggtggaggcggca
ttcgatctcaagtcccgcctcgaagcgttgggacttgcagcattcgtcaagacgtccggc
ggcaaaggcctgcacgtcgtcacacctctcgaaccgaaggccagctgggcgaaggtgaag
gggtttgccaaaaagctggcaaccgacatggcgaaggcagagccggataaatatctggcc
gtcgccacgaaagccaaacggaatggccgcattttcgtggattatttgcgcaacggtcgc
ggaagcacggcggtcgcgccctattccacccgcgcccgggctggcgccgcagtctcgatg
ccactggaatggtcggagctttccgatattgccgggcctgccgagttcactatcaagaac
acgccaaaccgcttgaaagcgctaaagacagacccctgggccaaattcttcgcctcggcc
aagccgctgccgggttag
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