KEGG   Agrobacterium larrymoorei: CFBP5473_19675
Entry
CFBP5473_19675    CDS       T06268                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
alf  Agrobacterium larrymoorei
Pathway
alf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:alf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CFBP5473_19675 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:alf03400]
    CFBP5473_19675 (ligD)
Enzymes [BR:alf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFBP5473_19675 (ligD)
DNA repair and recombination proteins [BR:alf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CFBP5473_19675 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S Ripply mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QCJ00150
UniProt: A0A4D7DZ12
LinkDB
Position
linear:complement(1169507..1171984)
AA seq 825 aa
MGLQAYNQKRRFDKTPEPKGEAAGSSGNSFVVQKHDARRLHYDFRLEMDGVLKSWAVTKG
PSLDPNEKRLAVHVEDHPLSYADFEGIIPKGQYGGGTVIVWDRGTWSPIGDVKKAYRKGH
LEFELDGEKLKGRWHLVRMKGKAEEKRENWLLIKAHDDEASDTSDIIEEAANSVKTGRSL
EDVAKNPQDTWNSKETSAKSKPPVKAEKQVHDFPKGSRKASMPSFIKPALATLKNNAPEG
TRWLHEIKFDGYRIQARIEKGEVVLLTRSGLDWTEKFGDAIREAFTRLPVETAIIDGELV
VEKENGVSDFSALQADLSNGKSDRFRYYAFDLIYLDGRDLQSAELLERKALLEKLLPSDD
PVLYYSAHFQEEGDRVLQHACTLGLEGVISKVANSKYVSGRKGQWIKSKCSSGQEFVIGG
YTLSSASDQAIGSLALGVYEGGKLRHVGRVGTGFTAETSEQIFDRLKPLSQEESPFSKKL
TALARRGLHYVKPELVAQVEFRGWSGDGNLRHASFQGLREDKAPEEIRKEVENVTETEKP
QTSVKFTHPERLYWPEEKITKADLAEYYAEVWEHIEPYITNRALSLLRCPEGIDGQTFFQ
KHPWRGMNKAIGAIKDPKDRHGEPLVVIKDFDGMMALVQSAVLEIHPWGSTTKSWEKPDM
ITMDLDPADDVPWPAVVEAAFDLKSRLEALGLAAFVKTSGGKGLHVVTPLEPKASWAKVK
GFAKKLATDMAKAEPDKYLAVATKAKRNGRIFVDYLRNGRGSTAVAPYSTRARAGAAVSM
PLEWSELSDIAGPAEFTIKNTPNRLKALKTDPWAKFFASAKPLPG
NT seq 2478 nt   +upstreamnt  +downstreamnt
atgggtctgcaagcctacaaccagaagcgccgtttcgacaaaaccccggagccgaaaggt
gaggcggcgggcagttccggcaacagtttcgtggtacagaagcatgatgcgcgaaggctt
cattatgatttccgccttgagatggacggcgttctgaaaagctgggcggtgacgaaggga
ccgagcctggacccgaacgaaaagcgcctcgcagtccatgtcgaagaccatccgctgagc
tatgcggatttcgagggcatcattcccaagggccaatatggcggcggcaccgtgatcgtc
tgggatcgcggtacatggtctcccatcggcgatgtgaaaaaggcctatcggaagggccat
ctggaattcgagcttgacggcgaaaagctgaagggccgctggcatctggtgcggatgaag
ggcaaggcggaggagaagcgcgagaactggcttctgatcaaggcgcatgacgatgaagcc
agcgatacgagcgacatcatcgaggaggccgccaattcggtaaagaccggcagaagcctg
gaggatgtggcgaagaaccctcaggatacatggaattcgaaggagacatcggccaagagc
aaacctccggtcaaagccgaaaagcaggtgcatgattttccgaaaggaagccgcaaggcc
tccatgccgtctttcatcaaacctgctcttgccaccctgaaaaacaacgcccccgaaggg
acccgctggctgcacgaaatcaagttcgatggctatcgcattcaggcgaggatcgagaaa
ggcgaggtcgtgttgctgacccgcagcggcctcgattggacggagaaattcggcgatgca
atccgcgaggccttcacccggctacctgtcgagacggcgatcatcgacggcgaactggtt
gtcgagaaagagaatggcgtttccgatttctccgctcttcaggctgatttgagcaacggg
aaaagcgatcgctttcgctactacgccttcgatctgatctatctggatggccgcgatttg
cagagtgccgagctgctggagcgcaaggcgctgctggaaaagctgcttccgtccgatgat
cccgttctttactatagcgctcattttcaggaagagggcgaccgcgtgcttcagcatgcc
tgcacgcttgggctggaaggcgtcatctccaaggtggcgaattcgaaatatgtttccggg
cgcaagggccagtggatcaaatccaagtgcagcagcggccaggaattcgtcattggcggt
tacaccctctcctcggcatcggatcaggcaatcggctcgcttgcgcttggtgtttatgaa
ggtggcaagctgcgccatgtcggtcgcgtcggcaccggctttaccgcagagacttccgag
cagattttcgacaggctgaagccgctcagccaagaggaaagtccgttctcaaaaaagctg
acagcgctcgcgcggaggggtctgcactacgtcaaaccggaactggtggcgcaggtggag
tttcgcggttggtcaggcgacggcaacctccgccacgcctcttttcaggggttgcgcgag
gacaaggccccggaggaaatccgaaaagaggttgagaacgtgaccgaaacggaaaagccg
caaacgagcgtgaaatttacgcatcctgaaaggctctactggcccgaagaaaagatcacc
aaggcggatcttgcggaatactatgccgaggtctgggaacacatcgagccctacatcacc
aaccgcgcgctttcattgctgcgctgcccggagggcatcgacgggcagacgttttttcag
aagcacccgtggcggggcatgaacaaggccatcggcgcgataaaggacccgaaggacagg
cacggcgaacctctggtggtgatcaaggatttcgatggcatgatggcattggtgcagtct
gccgtgctggaaatacacccatggggctccaccaccaaatcctgggaaaagccggatatg
atcaccatggatctcgatcccgctgacgatgtgccgtggcctgcggtggtggaggcggca
ttcgatctcaagtcccgcctcgaagcgttgggacttgcagcattcgtcaagacgtccggc
ggcaaaggcctgcacgtcgtcacacctctcgaaccgaaggccagctgggcgaaggtgaag
gggtttgccaaaaagctggcaaccgacatggcgaaggcagagccggataaatatctggcc
gtcgccacgaaagccaaacggaatggccgcattttcgtggattatttgcgcaacggtcgc
ggaagcacggcggtcgcgccctattccacccgcgcccgggctggcgccgcagtctcgatg
ccactggaatggtcggagctttccgatattgccgggcctgccgagttcactatcaagaac
acgccaaaccgcttgaaagcgctaaagacagacccctgggccaaattcttcgcctcggcc
aagccgctgccgggttag

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