Aquicella lusitana: AQULUS_02920
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Entry
AQULUS_02920 CDS
T06205
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
alg
Aquicella lusitana
Pathway
alg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AQULUS_02920 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alg03021
]
AQULUS_02920 (rpoD)
Transcription machinery [BR:
alg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AQULUS_02920 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DsrD
Motif
Other DBs
NCBI-ProteinID:
VVC72579
LinkDB
All DBs
Position
1:complement(309058..310920)
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AA seq
620 aa
AA seq
DB search
MDQQDSQKESQKSRLKELINRGKEQGYLTYAEVNDHLPADITDSEQIEDIISMINDMGIR
VSEEAPEMEELLLTENEAAEDESAAEEVANALAVVDGELGRTTDPVRMYMREMGRVELLS
REGEIAIAKRIEEGVNQMLTTLAYQPQMIAEVLGDYDRVEKGELRLSDVISGYIEPNLEG
EDGDEEKESAAPAKIAAESEDEEEEGEGAADPFDDEAGLDPEVARERFEGLRKLYQETIA
AEKKHGQKHKKCIAKRDELAKYFMDIKLSPRQFNKLSRKMRSMLDEIRSQERAIMDLCVN
KGKLPRKAFISSFINNETNIDWIHQHEGKSYFSDMEKFVPDIQRAQKKLITLEEQMRMTI
AEIKEVNRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYQRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQLLQETG
QEPTPEELSRRMNIPEDKIRKILKIAKEPISMETPIGDDEDSHLGDFIEDMNTMSPIDAA
TNFGLSEAVQKVLGSLTPREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRAEQLRSFLEEQE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaagattcgcagaaagaatcccagaaatcacgtcttaaagaattgattaac
cgcggtaaagagcagggttacctgacttatgccgaggtcaatgaccatttgcctgctgat
attaccgactctgaacagatcgaagatattatcagcatgatcaatgacatgggtatccgt
gtctctgaagaagcgcccgaaatggaagaactgctgcttacagaaaatgaagcagctgaa
gatgagtccgcagcggaagaagtggcaaatgctctcgctgttgtagacggcgaattaggc
cggaccacggacccggtgcgcatgtacatgcgtgaaatgggtcgcgttgagctgctctcc
cgcgaaggtgaaatcgctatcgccaaacgcatcgaggaaggcgtcaatcagatgttgacg
acgcttgcctatcagcctcaaatgattgcagaagtgctgggtgattatgaccgggttgaa
aagggtgaattacgattaagtgatgtcattagcggctatatcgagcctaaccttgaaggc
gaagatggcgatgaagaaaaagaatccgccgcacctgccaaaatagcagcagaatccgaa
gatgaagaagaagaaggcgaaggcgctgccgatccatttgatgatgaagccggtcttgat
ccagaagtggccagagaacggtttgaaggcctgcgcaaactctatcaggagaccattgcg
gcagaaaaaaaacacggccagaagcataagaaatgcatcgcaaaacgcgatgaattagcc
aaatatttcatggacattaaattatcgccgcgtcagtttaataagctgtccagaaaaatg
cgcagtatgctggatgaaattcgctcacaggaacgcgcgatcatggatctgtgcgttaac
aaaggcaaactcccgcgcaaagcgtttatcagctcatttatcaataacgaaacgaatata
gactggattcatcagcacgaaggtaaaagttatttcagtgatatggaaaaattcgtgccc
gatattcagcgcgcacagaagaaactgattacactcgaagaacagatgcgcatgactatc
gctgaaatcaaggaagtcaatcgccgtctttccatcggtgaagccaaagcgcgtcgcgcg
aaaaaagaaatggtcgaagccaatctccgactcgttatctcgatcgcgaagaaatacacc
aatcgcggtctacaatttctcgacctgattcaggaaggcaacattggcctgatgaaggca
gtcgataaattcgagtatcagcgcggttataaattctctacctatgctacctggtggata
cgtcaggctatcacccgttccattgccgaccaggcacgaaccatccgtatcccggtgcac
atgatcgaaaccatcaacaaactgaaccgtatctcgcgtcagctgctgcaggaaaccggc
caggaaccgacgccggaagaattaagccgccgaatgaacataccggaagataaaatccgc
aagatccttaaaatcgccaaggaacccatctccatggagacaccgattggcgatgatgaa
gattcgcatctgggtgattttatcgaagacatgaataccatgtcgcccatcgatgcagcg
accaatttcggcttgtcagaagccgtgcaaaaagtattgggatcactgacgccgcgcgaa
gcaaaagtgttgcgtatgcgcttcggtatcaacatgaatacggaccatacactggaagaa
gtgggcaaacaatttgatgtcacccgcgagcgtattcgtcagatcgaagcaaaagccttg
cgcaaactgcgtcacccttcccgcgccgagcaattgcgcagcttcctggaagaacaagag
taa
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