Aquicella lusitana: AQULUS_12220
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Entry
AQULUS_12220 CDS
T06205
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alg
Aquicella lusitana
Pathway
alg03030
DNA replication
alg03430
Mismatch repair
alg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AQULUS_12220 (dnaE)
03430 Mismatch repair
AQULUS_12220 (dnaE)
03440 Homologous recombination
AQULUS_12220 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alg03032
]
AQULUS_12220 (dnaE)
03400 DNA repair and recombination proteins [BR:
alg03400
]
AQULUS_12220 (dnaE)
Enzymes [BR:
alg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AQULUS_12220 (dnaE)
DNA replication proteins [BR:
alg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AQULUS_12220 (dnaE)
DNA repair and recombination proteins [BR:
alg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AQULUS_12220 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
VVC73482
LinkDB
All DBs
Position
1:1317133..1320582
Genome browser
AA seq
1149 aa
AA seq
DB search
MDLNFVHLRIHTEYSLRDGLITIPSLMEKAAAFGMPAIAITDLGNLYAIVKFYQAAISAG
IKPIIGIDIQVAVNSDLKELSRLTLLCQTHEGYQNLLKLVSKSYLEGQANGQPVVQKAWL
SSSLTEGLIALSGAQEGDIGQALLRHEQEKAQDCLAFWQSLFSNRFYIEVSRTGKAQEHE
YIQSVVKLAESASVPVVATNDVRFLTRDDFEAHEARVCIQEGVTLNDPHRPRLYTDQQYL
RSQAEMQKLFADIPEALANSVEIAKRCNVTFTLGKSQLPHFPVPAGYTTESYLSEVVKEG
LEERLKNLFDTQAEDFATQRKIYDERLEQELQVINKMGFAGYFLIVADFTKWAKENGIPV
GPGRGSGPGSLVAYALKITDLDPLALELLFERFLNPERVSMPDFDIDFCMEGRDRVIEYV
MNKHGHDSVSQIITYGTMAAKAVVRDVGRVLGLGYGFVDKIAKLIPFELGITLDKAMEQE
PLLRERYEQEEEVRTLIDLARKLEGITRNVGKHAGGIVIAPGKLTDFVPLYCEPNEASHP
VTQFDKDDVEAVGLVKFDFLGLKTLTIIDRALKVINLNRARKNEAPIDISLIPLNDPESF
RLLKACQSTAVFQLESHGMRDLIKRLQPDCFEDLVALVALFRPGPLQSGMVEDFINRKHG
RAKVIYPHPKLEPILRPTYGTIVYQEQVMQIAQVLAGYTLGAADILRRAMGKKKPEEMAK
QREIFCQGAVERGVNADVATHIFDLMEKFAGYGFNKSHSASYALIAYQTAWLKTHYPAAF
MAAVLSSDMDRTEKVIVLLDECKSLKLHVSPPDINHSDYFFKVEDDKNLVYGLGAIKGVG
EAAIENIIAAREQNGPFTDLFDFCQRIDLRKVNRRVLEALIKSGCFDTFGKHRASLMASL
NNALQQAEQALHNETYGQHDLLGMTMNTAQPQYIEALPWPSDLQLQGEKETLGFYLTGHP
LHQYLEELAHFTTCRIAELHPAEHQSACVAGIISLVRTRQTKRGDRIAIVTLDDGTTQIE
MVCFADAYQKYREWLNEDQLVVIEGDVSLDEFNNLPRLVCRDLYTIDQARARFSKCLQIH
VSEMAFDMQQLKSLLISHRGGNCPVVFRYENNGIKADITLGKEWLIKPAETLLSLLQSAL
PEAQVQFVY
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaattttgttcatttacgtatacatacagaatattctttgcgcgatggttta
attaccatcccctcactgatggaaaaggctgctgcctttgggatgccagccattgccatt
acagacctgggcaatttgtacgctattgtcaaattctatcaggcggctatcagcgcaggt
attaagccgattatcggtatagatattcaggttgccgttaacagtgatttaaaagaactc
tcccgcctgactctcctttgccagacacacgaaggttatcaaaacctgttaaaactggtt
tcaaaaagttatctggaagggcaagccaatggacagcctgtggtccagaaagcctggctt
tcctcttccttaacagaaggattgatcgccctctccggcgcccaggaaggcgatatcggg
caagctttgctccgtcatgagcaagaaaaagctcaagattgcctggctttctggcaatcg
cttttttccaaccgtttttatattgaagtcagccgaacgggcaaggcgcaggagcatgaa
tatattcaatcggtagtgaaactggctgaatcagcttccgtacctgtcgttgcgaccaat
gacgtacgatttctgacccgggatgattttgaagcccatgaagcccgcgtctgcatccag
gaaggtgtgacgttgaatgatccgcatcggccaagactttatacagaccagcagtactta
cgcagccaggcggaaatgcaaaagctgttcgctgacataccagaagcccttgccaattcc
gttgaaatcgcaaaacgctgtaatgtcacctttaccctgggcaaaagccaactgccccac
ttcccagtgccagctggctatacgactgaaagctatctttctgaagttgttaaagaaggc
ctggaagaacgtctgaaaaatctttttgatacccaagctgaagactttgcaactcaacgc
aagatttatgatgagcggcttgaacaggaactacaggtcatcaacaaaatgggttttgcg
ggttattttctcatcgtggctgacttcactaaatgggccaaggaaaatggcatccctgta
ggcccaggtcgtggttccggacccggatcgctggttgcctacgcgctaaaaataaccgac
ctggatccgcttgcgctcgaacttctcttcgaacgatttctgaaccctgagcgtgtatcc
atgcccgattttgatatcgacttctgcatggaaggccgcgaccgcgtcattgaatatgtc
atgaataaacatgggcatgacagtgtttcccagatcatcacttacggtacgatggcagcc
aaggcagtcgtacgtgatgtgggacgtgtattgggactgggctatggcttcgtcgacaaa
atagccaaactgatcccctttgaactgggcatcactttggataaagccatggaacaggag
ccgctgctgcgtgaacgctatgaacaggaagaagaagttcgcacactgattgacctcgcg
cgaaaattggaaggcatcactcgtaatgtgggcaaacacgcgggcggtattgtcattgcg
ccggggaaattgactgactttgtgccgctttattgcgaacccaacgaagcctcacatcct
gtcacccaatttgacaaagatgacgtggaggcggtcggccttgtcaaattcgattttctg
ggattaaaaacactcaccatcattgatcgcgcattaaaagtcattaaccttaatcgtgca
agaaaaaacgaagcgcccatcgatatcagcctgattccactaaatgatcctgaatcattc
cgtttgctgaaagcctgtcaatccaccgctgtctttcaacttgaatcacacggcatgcgt
gatcttatcaaacgtttgcagccggattgctttgaagatttggttgcgctcgtcgccttg
tttcggcccggaccactacagtccggcatggtggaagactttatcaatcgcaaacacgga
cgcgccaaagtcatttacccccatcccaaactggaacccattttacggcctacttacggt
accattgtctatcaggaacaggtgatgcagatcgcacaggtactggctggctacaccctg
ggcgctgcagatattttacgccgcgccatgggtaagaaaaaaccggaggaaatggctaaa
caacgtgagatcttctgccagggtgctgttgaacgcggagtgaatgcggatgttgccacc
catatttttgatctgatggaaaaatttgcgggttatggatttaataaatcccattccgct
tcgtatgccctcattgcttatcagactgcgtggctgaaaacgcattatcctgcagccttt
atggccgccgtgctgtcttcggatatggaccgcacagaaaaagtgattgtgctgctggat
gaatgcaaatcactcaaattgcacgtttccccgccagacatcaatcatagtgattacttt
tttaaagtagaggatgacaaaaacctcgtctatggattaggcgccatcaagggcgttggt
gaagcagcgattgaaaatattattgccgcgcgcgaacaaaatgggcctttcacggattta
tttgatttctgccaacgtatagatttgcgcaaggtcaatcggcgtgtactcgaagcgctg
atcaaatcaggttgttttgatacgtttggcaaacatcgggcttcactgatggcttcattg
aataatgccttacagcaggctgaacaggccttgcacaatgaaacgtacggtcagcatgat
ttgttaggcatgacaatgaacaccgcacagccgcagtatattgaggctctgccctggccg
tctgatctgcaattgcaaggagaaaaagaaacccttggattttatctgacaggtcatcct
ctgcatcaatatcttgaagaacttgctcactttacaacatgccgtatagccgaactccat
cccgcggaacatcaatccgcctgcgttgcggggatcatttctctcgttcgtacccgccaa
actaaacgcggcgatcgcattgcaatcgtcacgctggatgatggaaccacacaaattgaa
atggtctgttttgccgatgcttaccagaaataccgcgaatggctcaacgaagaccagctg
gtcgttatcgaaggggatgtcagcctggatgaattcaacaaccttccgcgcctggtttgc
cgtgatttgtacaccatcgaccaggcccgggcacgattttctaagtgtctgcaaattcat
gtctcagaaatggcatttgatatgcagcagctaaaatccctattgatttcgcatcgcggt
ggcaactgcccagtcgtgtttcgttatgaaaacaacggtattaaagcggatatcacgctt
gggaaagaatggctgattaaacccgccgaaacattattaagcttgcttcaaagtgcacta
ccggaagctcaagtgcagtttgtttattaa
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