Aquicella lusitana: AQULUS_15260
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Entry
AQULUS_15260 CDS
T06205
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
alg
Aquicella lusitana
Brite
KEGG Orthology (KO) [BR:
alg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alg03016
]
AQULUS_15260 (rtcB)
Enzymes [BR:
alg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AQULUS_15260 (rtcB)
Transfer RNA biogenesis [BR:
alg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AQULUS_15260 (rtcB)
Prokaryotic type
tRNA splicing ligases
AQULUS_15260 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
PARG_cat_N
Motif
Other DBs
NCBI-ProteinID:
VVC73777
LinkDB
All DBs
Position
1:complement(1632755..1634176)
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AA seq
473 aa
AA seq
DB search
MDMTDIKPLDPYRWTITSTPKPVILYGNKALIEEMDEKVREQIVNVTKLPGLVGAAMTMP
DAHWGYGFPIGGVAAFDPDEGGIISAGGVGFDISCGVRCLRTNVFINDVSGHLLQIVDAL
FNTVPAGVGSEGEIRLSMTEINKVMTGGAEWALRKGYGVREDLNYVEEKGCMADAEPDNV
SDQAKKRQLGEMGTLGSGNHYLEVEVVEKIYDAEAARAFGISEGQIIIAIHCGSRGLGHQ
IGSDYLVALAKAAGRLGIHLPDRELACAPILSEEGQRYIGAMRAGINCALANRQIITHLT
REAMSSIIPDIHIETLYDVSHNTCKQEKHRVDNKERELFVHRKGATRALPPGHMLLPERY
KQTGQPVFIGGSMGTGSYLLAGNPVEQNQAFSSASHGAGRKMSRHQALKQWHGRQLIDEL
ERQKIYIRSKTMRGVAEEAPGAYKDVDEVAEATEKGGLARRVAFLRPLACIKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaccgatattaaaccgcttgatccttatcgctggaccattacctctactcca
aagccggttattttatatgggaataaagccttaattgaggaaatggatgagaaggtacgc
gaacaaattgtcaatgtgacaaaactgccgggccttgtgggtgcggcgatgaccatgccg
gatgcgcactggggttacggctttcctattgggggagtggcggcatttgatccggatgaa
ggcggtattatttcagcgggcggtgtaggatttgatatttcctgcggcgtgcgttgtttg
cgcaccaatgttttcatcaacgatgtgtctggacatttactgcaaattgtcgatgcatta
tttaatactgttcctgcgggtgtgggttccgaaggagaaattcgtctctctatgacggaa
attaacaaggtaatgactgggggtgcagagtgggcgttacgtaaaggttacggtgtgcgt
gaagatctcaattatgttgaagaaaaaggctgtatggcagacgcagaacctgacaatgtt
tctgatcaggcaaaaaaacgccagctcggcgagatgggaacgctgggttcaggcaatcat
tacttggaagtagaagtcgtcgaaaaaatttatgatgcagaggcagcacgagcatttggc
atcagtgaaggacaaatcattattgccattcattgcggttcaagaggattgggacatcag
attggatccgattatcttgtggcattggccaaggcagccggtcggttgggtattcattta
cccgatcgcgaattggcgtgtgcccccattctttctgaagaaggccaacgatacattggc
gcaatgcgtgcggggattaattgtgcgctcgctaaccggcaaattatcacgcatctgacc
cgagaagccatgtcatccatcattcccgatattcacatcgaaacgttgtatgatgtttcg
cataatacgtgcaaacaggaaaagcatcgcgtcgataataaggagcgtgaattgttcgta
caccgtaagggtgccacccgggcattaccgcctggacatatgttattgcccgaacggtat
aaacaaacaggtcaacctgtatttattggcggcagcatgggcacaggctcttatttgttg
gcgggcaatcccgtggaacaaaatcaggctttttcttccgcaagtcatggtgctggtcga
aaaatgagtcgccatcaggcgctaaaacaatggcatggcaggcagcttatcgatgaactc
gagcggcagaaaatttatatacgctcaaaaacgatgcgtggcgtggcagaagaagcgcct
ggtgcttataaagatgttgatgaggttgctgaagcgactgaaaaaggtggcctggctcgg
cgtgttgcgtttttaaggccccttgcgtgtataaaaggataa
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