Aquicella lusitana: AQULUS_16230
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Entry
AQULUS_16230 CDS
T06205
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alg
Aquicella lusitana
Pathway
alg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AQULUS_16230 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alg03021
]
AQULUS_16230 (rpoC)
03400 DNA repair and recombination proteins [BR:
alg03400
]
AQULUS_16230 (rpoC)
Enzymes [BR:
alg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AQULUS_16230 (rpoC)
Transcription machinery [BR:
alg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AQULUS_16230 (rpoC)
DNA repair and recombination proteins [BR:
alg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AQULUS_16230 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RnfC_N
SpoVG
Motif
Other DBs
NCBI-ProteinID:
VVC73873
LinkDB
All DBs
Position
1:complement(1723065..1727228)
Genome browser
AA seq
1387 aa
AA seq
DB search
MKDLLNLVKQQNQPQEFDIIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTLSRVRRERMGHIELASPVAHIWFLRSL
PSRIGLMLDMTLRDLERVLYFEAYVVIDPGMTQLEKGQLLSEEAYYDAIEEYGDEFEARM
GADAIQELLRGINLEVEVPRIRDELTKTSSEAKHKKLSKRLKLMEAFLDSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIYSRLQMLGLASTIKAAKKMVEREEPEVWDVLEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLSLESQLEA
RSLMMSTNNVLSPANGEPIIVPTQDVVLGLYYLTRTRINARGEGMVFADVDEVHRAYENG
IVDLHAKIRARVKEYEFGDKPGEFKEKIRFVETTVGRAILSELLPKGLSFNLVNTTMNKK
TISSLIDAAYRQVGLKATVIFADHLMYTGFHYATRSGLSIGVNDLVIPKKKSDIIEQAED
EVRKIQAQFASGLVTQGERYNKVVDIWSRTNDLVAQAMMEELSAESVKDKEGHKVKQESF
NSIYMMADSGARGSAAQIRQLAGMRGLMTKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTSQGIMVTPLIEGGDVVEPLHERV
LGRVTAQDIYDPKSNTLVIPQGTLLDETWIRKLEDMTIDQVYVRTPIACESRFGICAACY
GRDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTTAVNNVQVKFPGKTK
LHNVKIIERQGGKFIAVSRSGTLAVLDDHGRERERYKIPYGAELSVKDGSKVDAGQIVAN
WDPHSHPVITEVAGHIKFVDLIEGVTMHRQTDELTGLASIVVTDPKQRSASGKELKPMIK
LVDDKGEDLYLAGTNLVAQYFLPADAIINFEDGAKVKVGDVLARIPQETSKTRDITGGLP
RVADLFEARRPKDAAVLAEISGIVSFGKETKGKRRLMITSPSGDVHEELIPKWRHINVFE
GEHVERGEVLVEGALNPHDVLRLLGVNALANYLVNEIQDVYRLQGVKINDKHIEVIIRQM
LRKVIIADPGDAGFIKAEQVEYSLLREVNERLKKENKIPARHEPMLLGITKASLSTESFI
SAASFQETTRVLTDAAVNGKLDELRGLKENVIVGRLIPAGTGLAYHLDRKVGSERQGQGD
QRTEKVK
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttactgaatctggttaaacagcaaaatcagccgcaagaattcgacattatc
cgcattggtcttgcttctccggatatgatccgatcctggtcttttggtgaagttaagaag
ccggaaacgattaattatcgtacattcaagccagaaagggacggacttttctgcgccaaa
atctttggtcctattaaggattatgaatgcttgtgcggcaaatacaaacgcctgaaacat
cgtggcgtggtttgcgaaaagtgtggtgttgaagtcacgctttcccgcgtgcgtcgtgag
cgtatgggtcacattgaactggccagccctgtcgcgcatatctggttcctgcgttcgctg
ccttcccgtatagggttgatgctggatatgaccctgcgtgatcttgaacgggttctctac
tttgaagcatatgtggtcattgaccccggtatgacgcaattggagaaggggcaattatta
tctgaagaagcttattatgacgccattgaagagtatggcgatgaatttgaagccagaatg
ggtgcagatgcgatccaagaattattgcgcggcatcaatctggaagtggaagtaccacgc
attcgcgatgagctgaccaagacttcctctgaagccaagcataaaaagctgtctaagcga
ttgaaactaatggaagcctttctggattcaggcaataaacccgaatggatgattctgacc
gtattacccgtgttaccacccgatctgcgtccattggttcccttggatggcggacgattt
gcgacttctgatctgaacgatctctatcgccgtgtgatcaatcgcaacaatcgtttaaag
cgattgctggatctgaatgcgccggacatcattgtgcgtaatgaaaaacgcatgctgcag
gaatccgttgacgcgttactggataacggtcgtcgcggccgtgccatcactggctccaac
aaacgtccgctcaagtcactggctgacatgatcaaaggtaaacaaggccgattccgtcag
aacctgcttggtaaacgcgttgattactccggtcgatctgtcatcgttgtgggtcctaca
ctcagactgcatcaatgcggattgccgaagaaaatggcgctggaattgtttaagccgttt
atttatagccgcctgcaaatgctcggccttgcttccacgattaaagctgccaagaaaatg
gttgagcgtgaagagcccgaggtttgggacgtattagaagaagtcatccgcgaacatcct
gtcatgctaaaccgtgcgccaacactgcaccgattgggtattcaggcattcgaacctgtc
ctgattgaaggtaaagcaattcagttgcatccgctggtttgtaccgcatataacgccgac
tttgacggtgaccaaatggctgtgcacgttccattgtcactggaatcgcagcttgaagcg
cgttcattaatgatgtctactaacaatgttctgtcacccgcgaacggcgaacccattatt
gttccaacgcaagatgtggtattaggcctttattaccttactcgtacacgcattaatgcg
cgtggtgaaggcatggtgtttgcagatgtggatgaagtgcatcgtgcttatgaaaacggc
attgttgatttgcatgctaaaattcgcgcgcgtgtcaaggaatatgaatttggcgacaag
ccgggtgaattcaaggaaaaaatccgttttgttgaaacaaccgtaggccgcgctattctt
tctgaattactgccaaagggtctctcttttaacctggttaacaccaccatgaacaaaaag
acgatttccagcctgatcgatgctgcttatcgtcaagtcggcttgaaagcaacggttatc
tttgcagatcatctgatgtataccggcttccactatgcgacgcgctccggtctttcgatt
ggcgtgaatgacctcgttatccccaagaaaaaatccgacatcattgagcaggcggaagat
gaagtccgcaagattcaggctcagtttgcatccggtctcgtgacccaaggtgaacgctat
aacaaagtcgtggatatctggtcacgcaccaatgacctcgttgctcaggcgatgatggaa
gaactttccgctgaatcagtgaaagataaagaaggtcacaaagttaagcaggaatccttt
aactccatttacatgatggcggattcaggcgcgagaggttccgctgcacagatacgtcag
ctggccggtatgcgtggtttgatgaccaagcctgacggtagcattattgaaacacctatc
acggcaaacttccgtgaaggtttaaacgtgttgcaatactttatttcaacacacggtgca
cgtaagggtctcgcggataccgcgcttaagaccgcaaattccggttacctaacccgccgt
ttagtcgatgtagcacaagatctggtgattaccgaagacgattgcggtacgagccaaggc
attatggtcactccgctgatcgaaggcggtgacgtggttgaaccgttacatgaacgtgta
ctcggacgtgtcacagcccaggatatttatgatcccaaatctaataccctggttatccca
cagggaaccttgttggacgagacatggattaggaagctggaagacatgaccattgaccag
gtctatgtacgcacacccattgcctgcgaatcccgctttggtatctgtgctgcctgttat
ggtcgagatcttgcacgcggtcaccgcgttaacattggtgaagctgttggcgttatcgct
gcgcagtcgatcggtgaaccgggtacacagctcactatgagaaccttccatatcggtggt
gcggcatcgcgtacgactgctgtgaataatgttcaggtgaaattcccaggcaagaccaaa
cttcataacgtcaaaatcattgaacgccagggcggcaagtttattgccgtatctcgctcg
ggcacattagccgtgctggatgaccatggtcgtgagcgtgaacgttataaaatcccctat
ggtgcagaactaagcgtcaaggatggatccaaggtcgatgctggccagattgtggcaaac
tgggatccgcatagccatcccgtgatcactgaagtcgccggacatatcaagtttgtagac
ttgattgaaggcgtcaccatgcatcgtcagacagatgaactgacaggcttagccagcatt
gttgtgactgatccaaaacagcgttcagcgagtggtaaagaactcaagccgatgatcaag
ctggttgatgacaaaggcgaagatttgtatctggcaggcaccaatttggtggcacaatac
ttcctgccggctgatgctatcatcaactttgaagacggtgcgaaagttaaagtaggcgat
gtgcttgcacgtattccgcaagaaacatcaaaaacacgcgatattactggtggtttgcca
cgggtagccgatcttttcgaagcgcgtcgtcccaaggatgccgcagtgcttgcggaaatt
tccggtattgtcagctttggtaaggaaaccaagggtaaacgccgcctcatgattacttct
ccatcgggcgatgtgcatgaagagctgattccaaaatggcgtcacattaacgtctttgaa
ggcgaacatgtggaaagaggtgaagtgctggtcgaaggcgcgctgaatccgcatgatgtg
ctaaggctgttgggagtgaatgcactggcgaattatctggtgaatgaaattcaggatgtt
tatcgcttgcaaggtgtaaaaattaacgataagcatatcgaagtgattattcggcagatg
ctgcgcaaagtcattatcgcagatccaggtgatgctggcttcatcaaggctgaacaggtg
gaatacagcctgctgcgcgaagtcaatgagcgtcttaagaaagaaaacaagataccagca
cgccatgagcctatgctgctgggtatcactaaagcatcgctttcgactgaatcattcatt
tcagccgcatccttccaggaaacgacacgtgtcctcaccgacgctgctgtcaatggaaag
ctggatgaattgagaggcttaaaggaaaacgtgattgttggtcggctgatcccggcaggt
accggcttggcctatcatcttgaccgtaaggtgggttctgagcgccagggtcagggtgac
cagcgtactgaaaaagtaaaataa
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