Aquicella lusitana: AQULUS_16240
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Entry
AQULUS_16240 CDS
T06205
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
alg
Aquicella lusitana
Pathway
alg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AQULUS_16240 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alg03021
]
AQULUS_16240 (rpoB)
03400 DNA repair and recombination proteins [BR:
alg03400
]
AQULUS_16240 (rpoB)
Enzymes [BR:
alg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AQULUS_16240 (rpoB)
Transcription machinery [BR:
alg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AQULUS_16240 (rpoB)
DNA repair and recombination proteins [BR:
alg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AQULUS_16240 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF8806
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
VVC73874
LinkDB
All DBs
Position
1:complement(1727351..1731415)
Genome browser
AA seq
1354 aa
AA seq
DB search
MGSTYSYTEKKRIRKNFGKLLSAIDVPSLLAIQMDSYRKFLGDGESSSGLHGVFSSVFPI
SSLSGYAALEYVSYRLGEPIFDVKECKMRGLTYAAPLRVKLRLVHYDREAEAGTTQAIKD
VKEQEVYMGEVPLMTEHGTFVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDTIHARIDRRRKLPVTILLRALGMSVEEILATFFENNIFDIQDGK
IILHLVSERLRGEIALFEVKKAGKVIIEKGRRVTARHIAQLEKAGIKNLEVPADYVLGKV
LAKAVIHPETGEVLGNANDIITGDMLKTLISSGIKRFETLYVNDIDRGPYVSDTLRIDST
TNAQEALVEIYRMMRPGEPPTKDAAEALFKNLFFTPERYDLSDVGRMKLNRRVGRKEITG
SGVLSKEDILDVLKTLIRIRNGEDVVDDIDHLGNRRVRCVGEMTENQFRIGLVRVERAVK
ERLSLPDIEAIMPQDIINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPG
GLSRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKVIN
GKVTDDVVYLSAIEEGDYIIAQANATVDEKRRLTDSLVPVRHKNEFTFSTPDRVQFMDVS
PKQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLKTEKPLVGTGIEHLVAKDSGVTM
VAKRGGEVDYVDASRIVVRVNDTEAEPGSTGVDIYNLTKYTRTNQDTCINQRPLVQKGDL
IEKHDVLADGQSTDTGELALGQNLLVAFMPWNGYNFEDSILISERVVQEDRFTSIHIEEL
TCVARDTKLGPEEISADIPNVSESALSKLDECGIVYIGAEVNSGDILVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPTGMEGTVIDVQVFTREGVKKDSRVLEIEKNELAKA
KQDLSDEMRIKENDVFSRVEKLLLNRVAEGGPNKLKKGSKITKTYLTEVPREKWFEIHLK
DASASKQLETAAKQLKKIRLDFEKAYEAKHQKITQSDDLAPGVLKIVKVYMAVKRRVQPG
DKMAGRHGNKGVISMIVPVEDMPYLADGTPVDIVLNPLGVPSRMNVGQVLETHLGWASKE
LGRKVGQMIDSRQSSRNIRQFLNSIYGIGKHKESLSSLNDDELLTLANNLREGVPFATPV
FDGASEEEIKAMLKLADLPETGQATLHDGRTGNAFDRPVTVGYMYMMKLNHLVDDKMHAR
STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYK
NIVDSDHYMESSMPEAFNVLIKEIRSLAINIEFD
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaacctactcatatactgagaaaaagcgtattcgtaaaaatttcggcaaactc
ctgagcgctattgatgtaccctcattgcttgcgatccagatggattcctatcgcaagttt
ctgggtgatggcgaaagctcaagcggcttgcatggcgtattttcatcggtatttccaatt
agcagcttgtcgggttatgcggcattagagtatgtgagttatcgcttaggcgagcctatc
tttgacgtaaaagaatgcaaaatgcgcggattgacttatgcagcaccgctgcgtgtcaag
ctgcggcttgtgcattatgatcgggaagcagaggcaggtacaacccaggccattaaagac
gtcaaagagcaagaagtctatatgggtgaagttcccctgatgacggagcatggtactttt
gtcattaatggaaccgagcgtgttgtggtttcccagttgcatcgttcaccaggtgtattc
ttcgagcatgataaaggaaaaacacattcgtccggcaaattgttattctctgcgcgtatt
attccttatcgcggttcatggctggactttgaatttgatcccaaagacaccattcatgca
cgtatcgatcgtcgccgcaagctgccagtgacaatcctcctgcgtgcgcttgggatgtca
gtggaagaaattttagctaccttttttgaaaataatatatttgatattcaagatggcaaa
attattctgcatcttgtgtcagaacgtctgcgtggtgaaattgcactgttcgaagtcaag
aaagcaggcaaggtcatcattgaaaaaggccgccgtgtcacggcgcgtcacattgcccag
ctggaaaaagcaggcatcaagaatctcgaagtgccagcagattatgtgttaggcaaagtg
ctggcaaaagcagtgatccatcctgaaacaggtgaagtgctgggtaatgcgaatgatatc
attaccggagacatgctaaagacgttaattagctcaggcatcaagcgttttgaaacactg
tatgtcaatgacatcgatcgtggcccttatgtttcagatacattacgcattgattcaacg
acaaatgcgcaggaagccctcgttgaaatttatcgcatgatgcgtcctggcgaaccgcct
accaaagatgcggcagaagccctgtttaaaaacctgttctttacaccggagcgttatgat
ctctccgatgtgggtcgcatgaaattaaaccgccgcgtgggcagaaaggaaatcacgggc
tcaggcgtgctgtcaaaagaagatatcctagatgtcttaaaaacactgattcgaattcgc
aatggtgaagatgttgtagacgatatcgatcacttaggcaatcgccgcgttcgttgcgta
ggtgaaatgacagaaaaccagttccgcattggcctggtacgtgttgaacgcgctgtgaag
gaacgcttaagccttccagatatcgaagcaattatgccgcaggatattatcaacgcgaaa
ccgatctccgcggcgatcaaggaattttttggttccagccagctttcccaattcatggac
cagaataatccgctttcagaaattacccataagcgccgcgtatcagcattgggaccgggt
ggtttgtcccgtgagcgcgcagggtttgaagtgcgtgacgtacatcctactcattatggt
cgcgtttgccctattgaaacgccggaaggccccaatattggtttgatcaactcgctagct
gtgtatgcgcgaaccaatgaatatggctttttagaaacgccttatcgcaaagttatcaac
ggaaaagtgacggacgacgttgtctatctgtcagcgattgaagaaggcgactatatcatc
gcacaggctaatgcaacggttgatgaaaaaagacgattaaccgattcactggtacctgtc
agacataaaaatgaatttaccttctcaacgcctgatcgtgtccaatttatggatgtttcg
cccaagcagatcgtttcggttgctgcggcactcatccccttccttgagcatgatgacgct
aaccgtgcattgatgggatcaaacatgcagcgccaagctgtgcctacgctcaaaacggaa
aaaccgttagtcggtacaggtatagagcatctggtcgctaaagattccggcgtgaccatg
gtcgcaaagcgtggtggtgaagtggattatgtggatgcctcacgtattgtagtccgcgta
aacgatacagaagcggaaccaggcagtacgggtgtggatatttacaatcttaccaagtat
acgcgtaccaatcaggatacctgtattaatcagcgtcctctggtgcaaaaaggcgatctc
attgaaaagcacgatgtgctagcagatggtcaatcaaccgataccggcgaactcgctctc
ggtcaaaacctgcttgttgcgtttatgccctggaatggatacaacttcgaagactctatc
ctcatttccgaacgcgttgtgcaggaagacagatttaccagtattcatatcgaagaatta
acttgcgttgcccgcgataccaaattgggaccggaagaaatttctgccgatattccgaat
gtcagcgaaagtgcattatcgaagttggatgagtgcggcattgtttacatcggtgctgaa
gtcaattcaggcgatattctggtcggtaaggtaacgccaaaaggtgaaactcagctgaca
ccagaagaaaaactgcttcgcgctattttcggtgaaaaagcatcagacgtaaaagatact
tcattacgtgtgccaacggggatggaaggtacggtcattgacgttcaagtattcactcgt
gaaggcgtcaagaaagattcacgtgtgctagaaattgaaaagaatgaactggctaaagcc
aagcaggatttaagcgatgaaatgcgtattaaagaaaatgacgtattctcccgcgttgaa
aaattgctgctgaaccgcgtggcagaaggcggacccaataaactaaagaagggttcaaag
attaccaaaacctatctgaccgaagtaccgcgcgaaaagtggtttgaaatccatctcaag
gatgcaagcgcgagcaaacagttggaaaccgctgccaaacaactcaagaaaatccgtttg
gactttgaaaaagcttatgaagccaagcatcagaagatcactcagagtgatgatcttgct
cctggtgtgctgaaaatcgtgaaggtctatatggcagttaaacgccgtgtgcagcccggc
gataaaatggcgggacgtcacggtaacaagggtgttatctccatgattgtacccgtggaa
gatatgccttatctcgcagacggaacccctgttgatatcgtgttgaatcccttgggcgta
ccatcacgtatgaacgttggacaagtgttggaaactcatttgggttgggcttcaaaagag
ctcggacgcaaagtgggccagatgattgattcgcgtcaatcctctcgcaatattcgtcag
ttcctgaattcgatttatggcattggcaagcacaaagaaagcctgtccagtttgaatgat
gatgaactgctcaccctggccaataatttgcgtgaaggtgtgccatttgcgacacctgta
tttgatggtgcttctgaagaagaaattaaagccatgctgaaactggctgatctgccagaa
acaggccaggctacattgcatgacggacgtacgggcaatgcttttgatcggccggtaact
gttggttacatgtacatgatgaagctaaatcacttggtggatgacaagatgcacgctcgt
tctaccggctcctacagtctggtgacccagcagccattaggcggtaaagcgcaatttggt
ggtcaacgattcggtgaaatggaagtgtgggcacttgaagcatatggcgctgcttacact
ttgcaggaaatgctgacagtgaaatcggacgatgtcaccggccgaaccaagatgtacaag
aacatcgtagacagtgatcactatatggaatcaagcatgccggaagcgtttaacgtgctc
attaaggagatccgttcgctggcgataaacattgagtttgattga
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integrated database retrieval system
