KEGG   Algoriphagus sp. NBT04N3: GYM62_00100
Entry
GYM62_00100       CDS       T09623                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
algo  Algoriphagus sp. NBT04N3
Pathway
algo00010  Glycolysis / Gluconeogenesis
algo00020  Citrate cycle (TCA cycle)
algo00260  Glycine, serine and threonine metabolism
algo00280  Valine, leucine and isoleucine degradation
algo00310  Lysine degradation
algo00380  Tryptophan metabolism
algo00620  Pyruvate metabolism
algo00630  Glyoxylate and dicarboxylate metabolism
algo00640  Propanoate metabolism
algo00670  One carbon pool by folate
algo00785  Lipoic acid metabolism
algo01100  Metabolic pathways
algo01110  Biosynthesis of secondary metabolites
algo01120  Microbial metabolism in diverse environments
algo01200  Carbon metabolism
algo01210  2-Oxocarboxylic acid metabolism
algo01240  Biosynthesis of cofactors
Module
algo_M00009  Citrate cycle (TCA cycle, Krebs cycle)
algo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
algo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
algo_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:algo00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    GYM62_00100 (lpdA)
   00020 Citrate cycle (TCA cycle)
    GYM62_00100 (lpdA)
   00620 Pyruvate metabolism
    GYM62_00100 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    GYM62_00100 (lpdA)
   00640 Propanoate metabolism
    GYM62_00100 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    GYM62_00100 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    GYM62_00100 (lpdA)
   00310 Lysine degradation
    GYM62_00100 (lpdA)
   00380 Tryptophan metabolism
    GYM62_00100 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    GYM62_00100 (lpdA)
   00670 One carbon pool by folate
    GYM62_00100 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:algo04147]
    GYM62_00100 (lpdA)
Enzymes [BR:algo01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     GYM62_00100 (lpdA)
Exosome [BR:algo04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   GYM62_00100 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 DAO HI0933_like FAD_oxidored FAD_binding_2 Lys_Orn_oxgnase GIDA NAD_binding_8 FAD_binding_3 Amino_oxidase 3HCDH_N 2-Hacid_dh_C DUF1854
Other DBs
NCBI-ProteinID: QYH37293
LinkDB
Position
17539..18936
AA seq 465 aa
MSSTKFDLIVLGSGPGGYVAAIRASQLGLKTAIVEAEELGGICLNWGCIPTKALLKSAQV
FEYINHSADYGITVKDAKADFEGMVKRSRGVADGMSKGVQFLMKKNKIEIIAGWGKIQPG
KKVEVADKDGKKTVYSADNIIIATGARSRELPSMKIDDKKIIGYRKAMTLEKQPKKMVVV
GSGAIGVEFAYFYNSIGTEVTIVEYMDRIVPVEDVEVSKALEKTYKKAGMKIMTSSEVTA
VDTKGSGCKVTVKTSKGEETLECDVVLSAAGVVSNLENCGLEDVGILVEKGKIKVDEYYK
TNMPGYYAIGDVVPGPALAHVASAEGIICVEKIAGHHPEPLDYNNIPGCTYCSPEIASVG
YTEAKAKEAGYEVRIGKFPFSASGKASAAGAKDGFVKLVFDKKYGELLGAHMIGANVTEM
IAEIVAIRKLETTGHELIKTVHPHPTMSEAVMEAAAAAYDEVIHL
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgtcttcgaccaaatttgatttaattgttttgggaagcgggccaggtggttacgttgcc
gctattagagcttctcagttaggactgaaaactgccattgtagaggctgaagagttggga
gggatttgtttgaactggggctgtattcctaccaaagctttattgaaaagtgcacaggtt
tttgaatacatcaatcactctgctgattacggtatcacggtaaaagatgccaaagctgat
tttgaaggaatggtcaaaagaagccgaggtgtggcagacggaatgagcaagggcgtacag
ttcctgatgaaaaaaaacaaaatcgaaatcatcgcaggttgggggaaaatccagccaggt
aaaaaggtcgaagtagcagataaggacggaaaaaagacggtttactctgcagataatatt
atcatcgcaacgggtgcaagatccagagaattgccttccatgaaaattgatgacaaaaaa
atcatcggttatagaaaggccatgactttggaaaagcagcctaagaaaatggtggtagtt
ggttcaggtgctatcggagttgagtttgcatatttttataattccatcggcacagaagtg
actatcgttgagtacatggatagaattgtgcctgttgaagatgttgaagtttccaaagca
ttggaaaaaacctacaaaaaagcaggaatgaagatcatgacttcttctgaagtgactgct
gtagatactaaaggatctggctgtaaagtgaccgtaaaaacatccaaaggggaagagacc
ttagaatgtgatgtagtgctttcagcagctggtgttgtttccaatttggaaaattgtgga
ttggaagatgttgggattttggtggaaaaaggaaaaatcaaagtagatgagtactacaaa
accaatatgccaggctactatgcgataggagatgttgttccagggccagctttggctcac
gttgcttccgctgaaggaattatctgtgttgagaaaattgccggacatcacccagagcca
ttggattacaataatatcccaggctgtacctactgttctcctgagattgcttcagttggc
tataccgaagcaaaagcaaaagaagctggttatgaagtaagaattggcaagtttccattc
tcagcttctggtaaagcttctgccgcaggagctaaggatggatttgtgaaattggttttt
gataaaaaatatggagagcttctaggtgcccatatgatcggggccaatgtgactgaaatg
attgctgaaatcgttgctattcgcaaattagagacaactggtcacgaattgatcaaaacc
gttcaccctcaccctactatgtctgaggcagtaatggaagcggcagcagctgcatatgat
gaggtgatccacttgtaa

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