Algoriphagus sp. NBT04N3: GYM62_00485
Help
Entry
GYM62_00485 CDS
T09623
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03030
DNA replication
algo03430
Mismatch repair
algo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYM62_00485 (dnaE)
03430 Mismatch repair
GYM62_00485 (dnaE)
03440 Homologous recombination
GYM62_00485 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
algo03032
]
GYM62_00485 (dnaE)
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_00485 (dnaE)
Enzymes [BR:
algo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GYM62_00485 (dnaE)
DNA replication proteins [BR:
algo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GYM62_00485 (dnaE)
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GYM62_00485 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
Intimin_C
T2SSK
DUF5514
Motif
Other DBs
NCBI-ProteinID:
QYH37362
LinkDB
All DBs
Position
complement(90064..94350)
Genome browser
AA seq
1428 aa
AA seq
DB search
MYIIFDTETTGLPRDYNAPMSDVDNWPRLVQLAWQLHDAQGKLISNHNYIVKPEGFTIPY
NAEKVHGISTKRALAEGHDLKEVLAIFEKDVAEAKHLVGHNIEFDINVVGSEFIRAELPM
PLTANPLDTKDISTEFCAIPGGKGGKFKWPTLTELHQKLFGEGFGDAHDAAYDVDATARC
FFGLITQGVQKPEEGVAVSEVIYEAPKLAEANFAQAKDSQKAAAKDVLKQAGKADISDLV
DIPFTHLHVHTQYSVLQATSEIPALVAKAKSMNMPAIAMTDHGNMMGAFHFVKAAMGAEI
KPIVGCEFNLCRDRKNKGQKDDGFQTVLIAKNKAGYHNLAKLASYANIEGFYYVPRIDKE
VLVQYKCDLIATTGGLWGEIPFLILNVGETQAEEAFIWWKEQFGDDFYVELNRHGIPEEE
KVNEVLLEFAKKYNVKYFAANNTYYNDKADAKAHDILLCVKDGELVEKPKKYVGKRGREF
RYGFPNDEFYLKSPEEMKKLFADLPEAIECTQEIVEKCEAYKLAREVLLPKFDIPEEFKD
QQDDVDGGKRGENAYLRHLTYEGAKKRYSEITPEIRERLDFELATIENTGYPGYFLIVQD
FTRAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPIEYDLLFERFLNPDRVSLPDIDIDF
DDEGRGRVIDYVIKKYGSNQVAQIITYGTMAAKSAIRDTARVLNLPLAEAGRLANLVPDI
KLKVLFELAKNRAALSDKLKGQGELIQKAEELLRVAQGQDESAKTVNQATVLEGSVRNTG
IHACGVIITPDDITNFVPVALAKDSDMVCTQFDNSVVESAGLLKMDFLGLKTLTLIKDAI
KIVKERHGLELDADTFPIDDEKTYELFQRGETVGIFQYESPGMQKYMRELKPTVFADLIA
MNALYRPGPLAYIPSFIKRKHGTEPITYDLEDMKEYLEETYGITVYQEQVMLLSQKLAGF
TKGEADVLRKAMGKKQKDVLDKMKPKFIEQAAAKGHDPKKLEKIWTDWEAFASYAFNKSH
STCYAWIAYQTAYLKAHYPAEYLASVLSNNMNDITQVTFFMEECKRMGIPVLGPDVNESK
NGFTVNAAGEIRFGMAAIKGAGSAAVDEIIKEREKNGPFKNIFDFAKRVNSRALNKKTME
ALAMAGGFDCFPEHHRRQYLEAPDGDVTLIEKAVKYAQKVQQEEDSAQVSLFGGSSGSMD
IPLPSIAPMEPFSQLQQLNIEKEVVGLYISGHPLDQYRLEIESFTNASLPDLNDLDALRS
KKEIRLAGSVSSFAHRTTKNGKPFGTLSLEDYQGGFTFFLFGEDYVKYKEYFMTGWFLFL
KGEVGQKRWDENSLEFKINSIMLLSEVRGKMIKGLRVNIDLDDLTLDLMEKLETITQKYK
GEAKLYFDVIDRKENISLELFSKKFSIDPSAEMIKELKEIPEIVYKVE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtatattattttcgataccgagaccaccggtttaccccgagattacaatgcccccatg
tccgatgtggacaactggcctcgcttggttcaattagcttggcaacttcatgatgctcag
ggcaaactgatctccaaccataattacatcgtcaaaccggagggttttactattccctat
aatgccgaaaaagttcatggtatttctaccaaaagagcgctggcagaaggacatgacctg
aaagaggtcttggcgatttttgaaaaagatgtcgctgaggcaaagcatctggtcggtcat
aatatcgagtttgatatcaatgtggtcggttcggaatttatccgggctgaattgcccatg
ccattaacggccaatccactcgacacgaaggatatttccactgaattctgtgcgatccca
ggcggtaaaggaggcaaattcaaatggcctaccctaactgaattgcatcaaaaattattt
ggagaaggatttggggatgcgcacgatgcagcttatgacgtagatgcaaccgcccgatgc
ttttttggattgattacacagggtgtacaaaagccagaagaaggcgtagccgtttcagaa
gtaatctacgaagctcccaagcttgctgaagcaaattttgcgcaggctaaagacagccaa
aaagccgctgctaaagatgtattaaagcaggctggaaaagcagatatttctgacttggtg
gatataccattcacccatttgcacgttcatacacagtattcagttctgcaagcaacctca
gaaattcccgctttggtagccaaagcaaaatccatgaatatgccagctatcgcgatgact
gatcatggcaatatgatgggcgctttccactttgtcaaagctgctatgggcgcagaaatc
aagccgattgtaggttgcgaatttaacctctgcagagatcgaaaaaacaaagggcaaaaa
gacgatggttttcaaactgtcttaattgcaaaaaacaaggcaggctatcataatcttgcc
aaattggcctcatacgccaatatagaaggcttttattatgtcccgagaatagacaaggaa
gttcttgtgcagtacaaatgcgacttgattgccaccaccggagggctttggggagagatt
ccatttttgattttgaatgtgggagaaactcaagcagaggaagcgtttatctggtggaaa
gagcagtttggcgatgatttttatgtagagctcaatcgacatggaatcccggaagaagaa
aaagtcaatgaggttctcttagaatttgccaagaagtataatgtgaaatatttcgctgcc
aataacacctattataatgataaagcggatgcaaaagcccatgatattttgctctgcgtc
aaggatggggaattggtagaaaaacccaaaaaatatgtaggcaagcgaggacgggagttt
cgatacggcttcccaaatgacgagttttacctcaagtctccagaagaaatgaaaaaactt
tttgcagatctgccggaggctattgagtgcacccaggaaatcgtcgaaaaatgtgaagcc
tacaagctggccagagaggttcttcttcccaaatttgacattcctgaagaattcaaagat
cagcaggatgatgtagatggcggaaagcggggagaaaatgcctatctacgtcacctgact
tatgaaggtgccaaaaaacgctactcagaaatcactcctgaaatacgggaaagattagat
tttgagctggcaacgattgagaataccggctatccgggttacttcctcattgtacaggac
tttacccgggcagcccgggaaatgggcgtttcggtgggacccggaaggggttcagcggca
gggtctgctgtggcttactgcatcggaatcaccaatgtagatcctattgagtacgatctc
ctttttgagagattcttgaacccagatagggtttcacttcccgatattgatattgacttt
gatgatgaaggtagaggaagagtcattgactatgtaatcaaaaaatacggttctaatcag
gtcgcacaaatcatcacctatggtaccatggcggcaaaatcagcgattcgggataccgcc
agagtgctcaatcttcccttagcagaggcaggacgccttgccaatctcgttccggacatc
aagttgaaagtactgttcgagctggcgaaaaacagagctgctctctctgataaactgaaa
ggacagggagagttgatccaaaaagcagaagaattgcttcgggttgctcaagggcaggat
gaatcggcaaaaacagtcaatcaggcaacagttttggaaggctcagttcgaaataccggg
attcatgcctgtggggtaatcattacgccagacgatatcaccaatttcgttcctgtggcc
ttggccaaggattcggacatggtttgcacccagtttgacaactcggtcgtagaatcagcc
ggattgctgaaaatggactttttgggtctaaaaactctgaccttgatcaaagacgcgatc
aaaatcgtcaaagagcgtcacggtttagagttggacgcagacacatttccgatagatgac
gaaaagacctacgagttatttcagcggggtgaaacagtcggcattttccagtacgaaagt
cctgggatgcagaaatacatgcgtgagctgaaacctactgtttttgccgatttaatcgcg
atgaacgcgctgtatagaccaggaccattggcttacattccttctttcatcaaaaggaag
catgggaccgaacccatcacctacgatctggaggatatgaaagaatacctggaggaaacc
tatggaattacggtttatcaggaacaggtaatgcttctatcccaaaaactggccggcttc
accaaaggtgaggcagatgtacttcgtaaagccatgggtaaaaagcagaaggatgtcttg
gataaaatgaaacccaaatttatcgaacaggcagctgccaaaggacacgaccctaaaaag
ctggagaaaatctggacagactgggaagcttttgcttcttatgcattcaacaaatctcac
tccacctgttatgcctggatagcttatcaaactgcctatcttaaggcccattatccagcc
gaatacttagcctcagttctgagcaataacatgaacgatatcacgcaagtgacttttttc
atggaagaatgtaagcggatgggtatcccggtattaggaccggatgtcaatgaatccaaa
aatggctttactgtaaatgccgctggagaaatccgctttggaatggcagcaatcaaaggt
gctggctccgcagcagtagatgaaatcatcaaggaaagagagaaaaacggccctttcaaa
aatatcttcgatttcgccaaaagagtaaattccagagccttgaataagaaaaccatggaa
gctctggccatggccggtggctttgactgcttccctgaacatcaccgcagacaatacttg
gaagcaccggatggagatgtgactttgatcgaaaaagcggtgaaatatgcacaaaaggtg
cagcaagaggaagatagtgcacaagtaagtttattcggaggcagtagtggtagcatggat
attcccctgcctagtattgcacctatggagccattttctcaattgcagcaattgaacatt
gaaaaagaggtagtaggcttatatatttcaggtcacccattggaccaataccgcttggaa
attgagtcctttacgaacgcttctttgcctgacctgaatgatttggacgccttacgtagc
aagaaagaaatcaggctagccggatcagtttcttctttcgctcatagaaccaccaaaaac
gggaaacctttcggaaccttgagtttggaggactatcaaggaggctttactttctttttg
tttggagaggattatgtgaaatataaggagtacttcatgacaggctggtttttgtttctc
aaaggagaagtagggcaaaaacgctgggatgaaaattccttggagtttaagatcaatagc
atcatgttattgtctgaggtccgaggaaaaatgatcaaaggcctccgggtaaatattgac
ttggatgatttgactttagatttgatggaaaagctggagacaatcacccagaaatacaaa
ggagaggcaaaactctatttcgatgtgatcgaccgaaaagagaatatcagccttgaatta
ttttccaaaaaattttcaattgacccaagtgccgaaatgatcaaagaactaaaggaaata
cctgaaatagtctataaagtagagtaa
DBGET
integrated database retrieval system
