Algoriphagus sp. NBT04N3: GYM62_00735
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Entry
GYM62_00735 CDS
T09623
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM62_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
algo03019
]
GYM62_00735
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_00735
Enzymes [BR:
algo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYM62_00735
Messenger RNA biogenesis [BR:
algo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYM62_00735
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GYM62_00735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_24
Cas3-like_C_2
Fe_dep_repress
Cucumo_2B
Motif
Other DBs
NCBI-ProteinID:
QYH37406
LinkDB
All DBs
Position
144696..146609
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AA seq
637 aa
AA seq
DB search
MENRAQEILKQVFGWDDFRPVQKDVVFSVLDGKDTLALMPTGGGKSLCYQVPGLVKDGVC
LVVSPLIALMKDQVDQLKRRGVLAAAIFSGMSYREIDRTLDNCIHGNYKFLFVSPERLKS
ELFIERFRQMNINLIAVDEAHCISQWGYDFRPPYLEIAEIRKYHPSISVLALTASATPQV
EADILEKLEMKNPEIFRQSFARENLSYSVRLVENKLEKGCEILNRVSGSAIWYVRNRQAT
HQIAKALNQLGIKAGAYHAGMSMADRSKQQEFWMKNQLRVMVSTNAFGMGIDKPDVRVVI
HSDLPENLENYYQEAGRAGRDRKKAYAVLLSNEADFENVLGRAALVYPPIDFVRKVYQCL
ANYFRIAVGSNMLSSFDFEWGEFANTYNLGVLETFYALKVLEEEGFIGLSESYYSPSKIH
FLVGPQQLYEIQIAHASLDPVIKLLLRTYGGNLFSEYMKINEFKLAKALETSEAKIIKSL
EKLGQMEVVDYEKRKDKPQITFITSRYDAAKLPLNTKRISLRRELTLEKAKSMVAYAHQE
VICRTQFIQEYFGEKSDSRCGICDWCVENKKMEDPAWVEKKLKKQIIETLRSNGELSQSG
LLESLRISASEFTLELLRKLTDEGVIRQHKNGTLSID
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaccgggcgcaagaaatattaaagcaggtttttggatgggatgattttagacca
gtccaaaaagacgttgttttttctgttcttgacggaaaggacacacttgctttgatgccc
actggaggaggaaaatctctttgctatcaagtgcctgggctggtaaaagacggtgtttgc
ttggttgtaagtccattgatcgccttaatgaaggatcaagtggatcaattgaaaagacga
ggggtgttggctgccgcgattttttcaggaatgagttatcgggagatagaccgaaccttg
gacaattgcatccacggcaattataaatttctctttgtgtctccggaaagattgaagtca
gagctgttcatcgagcggtttcggcaaatgaatatcaatctcattgcagtagatgaagcc
cattgcatttcccaatggggatatgattttagacctccatatttggaaatcgctgaaatc
cgaaaatatcatcccagtatttcagttttggctttgacggcttctgccactccgcaagtt
gaggcagatattttagaaaagctggagatgaaaaacccggaaattttcaggcaaagcttt
gctagggagaatctgagttacagcgtgcgcttggtggagaataaacttgaaaagggctgt
gaaatattgaaccgggtttctggctcagcaatttggtatgttaggaatcgtcaggctacc
catcaaattgcgaaagcattgaatcaattgggaatcaaggcaggagcttatcatgcagga
atgtccatggctgatcggagcaagcagcaggagttttggatgaagaatcagctgagagtc
atggtcagtaccaatgcatttggaatggggattgacaagccggatgttcgagtagtgatc
cattcagacttgccggaaaatttggaaaattattaccaagaggctggcagagcaggccgg
gatagaaagaaggcttatgctgtcttactcagcaatgaggcagattttgaaaatgtccta
ggcagggctgctttggtttatcctcccattgactttgtgaggaaagtatatcaatgtctg
gccaactactttcgaattgctgtagggagtaatatgttgagcagctttgattttgaatgg
ggtgagtttgcaaacacctataatcttggagtattggagactttttatgctttaaaagtt
ttggaagaggaggggtttattggtttgagtgaaagctattacagtccttcaaaaattcat
tttttagtaggtcctcagcagttgtatgaaatacagattgcccatgcctcccttgatcct
gtgattaaactattgttgcggacttatgggggtaatctcttttccgagtatatgaagatc
aatgagttcaaacttgccaaggcactggagacctcagaagctaaaatcattaaatccttg
gagaaattagggcaaatggaagtggtggattatgagaaaagaaaggataagccccagatt
acttttattacctctcggtatgatgctgccaagttgccattgaatacgaaaagaatatcc
ttgcgcagagagttgactttggaaaaagctaagagcatggttgcatacgctcatcaggag
gtgatttgtcgaacacaattcattcaggaatattttggagaaaagagtgattcacgttgt
ggaatttgcgattggtgtgtggaaaataagaaaatggaggatcctgcctgggtggagaaa
aaattgaaaaagcagattatcgaaactttgagaagtaatggggagttatctcagagtggt
ttattggaaagcctgagaatttctgccagcgaatttacattggagcttttgagaaagctc
actgatgaaggggtcataaggcagcacaaaaatggaactttgagtatcgactaa
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