Algoriphagus sp. NBT04N3: GYM62_04315
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Entry
GYM62_04315 CDS
T09623
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
algo
Algoriphagus sp. NBT04N3
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
algo03009
]
GYM62_04315 (rlmD)
Enzymes [BR:
algo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GYM62_04315 (rlmD)
Ribosome biogenesis [BR:
algo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GYM62_04315 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Methyltransf_25
PrmA
Cons_hypoth95
N6_N4_Mtase
PCMT
FtsJ
Methyltransf_11
Rv2466c-like
Motif
Other DBs
NCBI-ProteinID:
QYH38058
LinkDB
All DBs
Position
complement(999681..1001087)
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AA seq
468 aa
AA seq
DB search
MSRKMKNKVITNLLIERIASEGKCVGHHEGKVVFVNQVAPGDVVDVRITRGKSSFMEGEA
IHFHEYSKDRIEPFCSHFGTCGGCKWQHINYDLQKNYKRQQVVDQFQRIAKVPIPEVLPI
LGSEKTRYYRNKLDFTFSNKKWLTLEQIRSGEDFDRNALGFHIPKMFDKIIDIEHCYLQG
NISNDVRNELRAFALANKLSFYDIREQVGLLRNLIIRTTSTNQSMVIVQFGENDPAGIEL
VMEFLKNKFPEITSLLYVINTKGNETFHDLDLVTYAGLPYIEEEMEGLKFRIGPKSFYQT
NSEQAYELYKVARDFAQLKGDEVVFDLYTGTGTIANFVAKQAKQVIGVEYVAAAIEDAKL
NSKINEIENTLFYAGDMKDVLNEEFIQNHAAPDVIITDPPRAGMHEDVVNMLLRLEAPKV
VYVSCNPATQARDIAMMGEKYQVERIQPVDMFPQTYHVENVVLLTLKS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaaaaatgaaaaataaggtcatcaccaacctattgatcgagcggattgcttcc
gaagggaagtgcgtagggcatcatgaaggaaaagtggtttttgtcaatcaggttgctccc
ggagatgtagtggatgttcgaattaccagaggaaaaagctccttcatggagggtgaagca
attcattttcacgagtattccaaggaccgaatcgagccattttgctcgcactttggcacc
tgcggaggttgcaaatggcaacatatcaattacgatcttcagaaaaactataaaagacag
caggtagttgaccaatttcaacgcatcgccaaagtccctattcctgaagtgcttccgatc
ttaggatcagaaaaaaccaggtactatagaaataagttggactttactttttccaacaaa
aaatggctaaccctagagcagatcagatcgggagaggattttgaccgaaatgccttgggc
tttcatatcccaaaaatgtttgataaaatcatcgatatcgaacattgctaccttcaggga
aatatttccaatgatgtcagaaatgagttaagagcttttgctttggccaacaaactcagc
ttctatgatattcgtgagcaagtgggcttattgagaaatctcatcatccgtaccacctct
actaatcaatccatggtcattgtgcagtttggtgaaaatgatcctgccggcatcgagttg
gtgatggagtttttgaagaataaattcccggaaatcacgtctttgctttatgtgattaac
accaaaggcaatgaaacctttcatgacctggatctggttacctatgccggtttgccgtat
atcgaagaggaaatggaaggcttaaaattccgaatcgggcctaaatctttttatcaaacc
aactcagaacaagcttacgaattgtataaagtcgcacgggatttcgcccaattgaaaggt
gatgaagtggtgtttgatctttatacgggtacaggcactatcgccaattttgttgctaag
caagccaagcaggtaatcggcgttgagtatgtagccgcggcaattgaagatgccaagttg
aactcaaagattaatgaaatagaaaatacgcttttctatgccggtgatatgaaggatgta
ttaaacgaagagtttatccaaaaccacgctgcaccggatgtcattattactgatccacct
agggcaggcatgcatgaagatgtagtgaatatgcttttgagattagaagctccaaaagtt
gtctatgtatcctgcaatcctgctactcaagccagggatattgctatgatgggagaaaaa
taccaagtggaacgaattcaacctgttgatatgttccctcaaacctatcacgtagaaaat
gtcgtactcttaacgctcaaatcatga
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