Algoriphagus sp. NBT04N3: GYM62_05860
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Entry
GYM62_05860 CDS
T09623
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03030
DNA replication
algo03430
Mismatch repair
algo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYM62_05860 (holA)
03430 Mismatch repair
GYM62_05860 (holA)
03440 Homologous recombination
GYM62_05860 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
algo03032
]
GYM62_05860 (holA)
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_05860 (holA)
Enzymes [BR:
algo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GYM62_05860 (holA)
DNA replication proteins [BR:
algo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GYM62_05860 (holA)
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GYM62_05860 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
QYH38349
LinkDB
All DBs
Position
1368031..1369053
Genome browser
AA seq
340 aa
AA seq
DB search
MPQNPVNVLKDLQGGKFAPIYFLDGEEPFYVDLITSFIEKNAIAEHEKSFNQIVLYGKDS
NMGLILNNARKFPMMAERQVVIVKEFQSLPDLGKEDSVKLLQGYLQNPLPSTILVLAHKH
KKLDGRSALYRDLDKKAVYVRSDKVQDYKLPAWIDAYFKDMGHSIEPKACQLLADSIGNN
LEVLTNEVGKMLINFQGATQVTVDHISKYIGINKDYNNFELLKAIGFRDVGKANKIIHYF
SQNPKAHPVIPLFSLIYNYFTRIALIHQSKVYSDSQVASVIGVPPFVAKEYVIAARNYKL
GKVIEVFRYIKEADLRFKGVDSGSLSESENLRELVYKILH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgccacagaatccagttaatgttcttaaagatctgcaaggagggaaatttgctcctatt
tattttttagatggagaagagcctttttacgtggatttgattaccagttttattgagaaa
aacgccattgctgagcacgagaaaagcttcaatcaaattgtgctttatggaaaagattcc
aatatgggattgattctcaacaatgcccgaaagtttcctatgatggctgaaaggcaagta
gtcattgtcaaggaatttcagagtttaccagatctaggcaaagaggattcagtaaagctt
ttgcagggttatcttcaaaatcctttgcccagcaccattttagttctggcgcataagcat
aaaaaattggatggtagatctgcgctatacagagacttagataaaaaagcagtctatgta
agatctgataaagtacaggattataaacttccggcttggatagatgcttatttcaaagat
atggggcatagcattgaacccaaagcttgtcaattattagcagactccattggaaataat
ctggaggtattgaccaatgaggtaggtaaaatgttgatcaattttcagggagccactcag
gtaactgtagatcatatctccaagtacattggcatcaataaggattacaacaattttgaa
ttactaaaagcgattggttttcgggatgtgggaaaagctaataaaatcattcactacttt
tctcagaatccaaaagcacatccggtaattccacttttctccctgatttacaattacttt
accaggatagcgctgattcatcaatccaaggtatattcagattcccaggtagccagtgta
atcggagttcctccctttgttgcaaaggaatacgtgatcgcagccagaaactataaattg
ggcaaggtaattgaggtgttcagatacatcaaagaggctgatcttcgttttaaaggagtt
gactccgggagtttgagcgaatcagaaaacctccgcgagcttgtgtataagattttacac
tga
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