Algoriphagus sp. NBT04N3: GYM62_08240
Help
Entry
GYM62_08240 CDS
T09623
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM62_08240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
algo03019
]
GYM62_08240
03009 Ribosome biogenesis [BR:
algo03009
]
GYM62_08240
Enzymes [BR:
algo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYM62_08240
Messenger RNA biogenesis [BR:
algo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYM62_08240
Ribosome biogenesis [BR:
algo03009
]
Prokaryotic type
rRNA helicases
GYM62_08240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QYH38785
LinkDB
All DBs
Position
1893250..1895013
Genome browser
AA seq
587 aa
AA seq
DB search
MENNTKFSDLGISAEILRAVEEMGYTQPSEIQTQAIPFVLEGRDVIGQAQTGTGKTAAFA
IPIIDLVDPEYNRPQAIILCPTRELAVQVEGEIQKLAKFHKRINSVAIYGGESIDKQIRV
LKKGVQIVVGTPGRVQDHINRGTLKLEDAGIIVLDEADEMLDMGFRDDIEAILQEMPEQR
QTVFFSATMAKPIMDLTRKYQTDPQIIKVAKKELTVDRIEQVFYEVKPSLKMELMTRLMT
VNNYALSVVFCNTKRMTDEVTESLGSRGILAEALHGDLSQAQRDKVMGKFRKGLCTVLVA
TDVAARGIDVDNVEAVFNFDLPLDEEYYVHRIGRTGRAGKSGTAINFVTGRRDFMKIRDL
EKFTKATIAKMDPPSVSDLIELKKAQLVKDVYRHLSKEEDNQIFEATIGQLLAEGLSMDQ
IALGLLKMTMGDAVKEMRDQDFALPSFNERRREGGRDGGRERGERGGRFERGGSDRFGRG
ERGEGRRERREGGRDSRDGGRRPERVRDANMARLFLNLGKKDRIRPNDIVGAIAGEAGIP
GRSIGGIDIFDNFSFVDVPQKDADHVIRTMKHNTIKGKSVNMEISKG
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaacacaaaattctcagacctggggatttcagcagaaatcttacgggcagtg
gaagaaatgggctatacccaaccttccgaaatccaaactcaagccattcctttcgtatta
gaaggtcgtgacgtaattggtcaggctcaaactggtactggaaaaaccgcagcttttgct
attcctatcatcgatttggttgatccggaatacaacagaccgcaggctattatcctttgc
cctacccgtgaacttgctgttcaggttgaaggcgaaattcaaaaacttgccaaatttcac
aaaagaataaactctgtagccatctacggtggtgaatctatcgacaagcagattcgcgta
ctgaaaaaaggcgttcagattgtagtaggtactccaggtagagttcaagatcacatcaac
agaggcacattgaagctggaagatgctggaatcatcgttttggatgaggcagatgaaatg
ctagacatgggctttagggatgatatcgaggcgatcttgcaggagatgccagaacaaaga
cagactgtcttcttctcagctactatggctaagcctattatggacttaaccagaaaatat
caaacagatccacaaatcatcaaggtcgccaaaaaagaactgaccgtcgatagaatcgag
caggttttttatgaggtgaagccttctttgaaaatggaattgatgactcgtctaatgaca
gtcaacaactatgcactttctgtggtattctgtaatactaaaagaatgaccgatgaggtt
actgagtctttgggttcaagaggaattctagctgaagcacttcacggagatctatctcaa
gctcagcgtgacaaagtaatgggcaagttcagaaaaggactttgtactgtattggttgcg
actgacgtagcagcaagaggtattgatgtagacaatgttgaggcagtgttcaacttcgat
cttccactggatgaggaatactacgtacacagaatcggaagaaccggtagagctggaaaa
tcaggaactgctatcaactttgtaactggcagaagagatttcatgaaaattcgtgacttg
gagaaattcaccaaggccacaatcgcaaaaatggatcctccttcagtttctgacttgatt
gagttgaaaaaagctcaattggtgaaggatgtttacagacatttaagcaaagaagaggat
aatcaaattttcgaagcgactattggccaattattggctgaaggtttaagcatggaccaa
attgctttaggattactaaagatgaccatgggagatgctgtgaaagaaatgagagaccaa
gacttcgcgcttccttcattcaatgaaagaagaagagaaggtggacgtgacggaggtcgt
gaaagaggagaaagaggcggaagatttgaaagaggtggaagtgaccgattcggacgtgga
gaaagaggcgaaggcagaagagaaagacgtgaaggtggaagagacagcagagatggtgga
agaagacctgagcgagttcgtgatgccaacatggcccgtctattcttaaacctaggtaaa
aaagacagaatccgtcctaatgatatcgtgggagcaattgcaggtgaagccggcatccca
ggcagaagcattggaggaattgacatatttgacaacttctcttttgtggacgttccacag
aaagatgctgatcatgtaatccgcactatgaaacacaacactatcaaagggaagtccgtt
aatatggaaatctctaaaggttga
DBGET
integrated database retrieval system
