Algoriphagus sp. NBT04N3: GYM62_09095
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Entry
GYM62_09095 CDS
T09623
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03030
DNA replication
algo03430
Mismatch repair
algo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYM62_09095
03430 Mismatch repair
GYM62_09095
03440 Homologous recombination
GYM62_09095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
algo03032
]
GYM62_09095
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_09095
Enzymes [BR:
algo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GYM62_09095
DNA replication proteins [BR:
algo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GYM62_09095
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GYM62_09095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
DUF7508
Motif
Other DBs
NCBI-ProteinID:
QYH38940
LinkDB
All DBs
Position
complement(2095125..2096504)
Genome browser
AA seq
459 aa
AA seq
DB search
MEFAIVDIETTGGNFRNGGITEVAIVIHDGQQIVHEYQSLINPQQNIPAYITGLTGIDDA
MVRESPTFDEIAEEIYELLEGKVFVAHQVNFDFGFIREFLGRSGYELKNPKLCTVRLSRK
IFPGMRSYSLGRICEQRNIPILARHRAMGDAKATAILFGQMLEENPEVIYSGLKKNSGES
FLPPNFSSQRFREIPEKCGVYYMLDQKGKVIYVGKANNIRDRFRGHFTGQSHPSIKQELK
AEVVDLKWKLTGSEFMALLLETLEIKRIWPKYNAALKSPRNIWGLFSYQDGRGFTRFQIA
KVIKSLQPLETFFSSEEAKAFLTDAIQTYELCSKLCGIRKVNCEVVNDTICQGACAEKED
TLKYNQRAQVFIQKVKDSKGDIRLELEGRTEDERAVCVFEGGMLREYGFIKDESEKLEAV
KPYPETSYVLRQFLHQFSAQQIQVISSRRNNQEILSFEF
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgccattgtggatattgagacaacaggaggaaacttcagaaatggagggatc
actgaagttgctattgtcatccatgatggacaacaaatcgtgcatgaataccaaagcctg
atcaatcctcagcaaaatattccagcttacatcaccggtcttacagggatagatgatgcc
atggtgagagaatcacctacttttgatgaaatcgctgaggagatttatgaattattggaa
ggaaaggttttcgtcgcccaccaagtcaattttgatttcggttttatccgtgagttttta
ggtaggtcaggctatgaattgaagaatccgaaactctgcacagtcaggttaagcaggaag
atttttccggggatgcgttcctacagtttgggaagaatttgtgaacaaagaaatattccc
atccttgctaggcatagagcgatgggtgatgctaaggcaactgccatattgtttggtcag
atgctggaagaaaatccggaggttatctattctggtttaaagaagaattctggtgagagt
tttttgcctccaaatttttcatctcagaggtttcgtgaaataccggaaaaatgcggagtc
tactacatgctggatcaaaagggaaaggtcatctatgtaggcaaagcgaataatataaga
gatcgattccgaggtcattttaccggtcagagccatccaagcatcaagcaggagttgaaa
gctgaagttgtagatttaaaatggaaattgactggttctgagtttatggctttgctattg
gaaactttggaaatcaaacgaatttggccgaagtacaatgcagcgttaaaaagcccaagg
aatatttggggcctattttcctatcaggatgggagaggattcactcggtttcagattgca
aaagtgattaaatccctgcaaccattagaaacttttttctcttccgaggaagcgaaggcc
tttttaacagatgcgattcagacctatgaactctgttccaaattgtgcggtattcgaaag
gtgaattgtgaggtagtgaatgataccatttgccaaggtgcatgtgcagaaaaggaggat
accctcaagtacaatcaaagagctcaggtatttatacaaaaggtgaaagacagcaaaggc
gatattcgactggagttagagggtagaacggaagatgaaagagctgtctgtgtttttgag
ggaggaatgcttcgggaatatggatttatcaaagatgaatctgaaaagttggaagcggtt
aaaccatatcccgaaacctcctacgtgctgaggcaatttttacatcagttttcagcccag
caaattcaagtcataagttcaagaagaaacaaccaagaaatactgagctttgagttttaa
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