KEGG   Algoriphagus sp. NBT04N3: GYM62_11105
Entry
GYM62_11105       CDS       T09623                                 
Symbol
priA
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
algo  Algoriphagus sp. NBT04N3
Pathway
algo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:algo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GYM62_11105 (priA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:algo03400]
    GYM62_11105 (priA)
Enzymes [BR:algo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GYM62_11105 (priA)
DNA repair and recombination proteins [BR:algo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GYM62_11105 (priA)
SSDB
Motif
Pfam: PriA_3primeBD DEAD ResIII PriA_C Zn_ribbon_PriA Helicase_C AAA_30 nSTAND3 AAA_22 AAA_19 NPHP3_N AAA_16 TsaE AAA_11 Sigma54_activat Zeta_toxin
Other DBs
NCBI-ProteinID: QYH39304
LinkDB
Position
2560357..2562876
AA seq 839 aa
MQSLFGEEDNMMMESGKNFADIILPVPIPRMFTYKIPKNLASEIQIGARVIVQFGRKKIL
TGIIGKVHNKPPQAYDAKPILEVLDDQPSVNPLQIRFWVWLASYYCCHIGEVMHAALPSG
LRLSSESKVQANPNFDRENAAYPMDEREDKILDALENQAELSYEDCEKILGVKTIHPILK
SLVAKEAVLIFEKVQEKYSPKIETRVRIKAEIASDKKALEGVFEGLAGKAKQESILLKYL
RDVPVFKNIKLNEKGVDKATLLEEGDSESSLKTLIKNGVFESFKVVVNRIEEMEPEKEPA
KLSDSQEQAVAEIHQHFEEKQCVLLHGITGSGKTEIYIRLIQEVLESGSQVLMLLPEIAL
TTQIVSRLQQVFGSKMGVYHSKYSDNERVEVWNGVLSGRFSFVVGVRSSIFLPFDSLGLI
IVDEEHESSFKQFDPAPRFQARDSAIMLAYFHQAKTLLGSATPSFESYFNALQEKYGYVQ
LHQRYGEAQLPQYHLANLSADRKKNLLKLDSTRLMREKIQDALSKNEQVLIFQNRRGYSP
YIQCEDCGWTGQCVQCDVSLTYHQFAEELRCHYCGYKEKVPSSCPACASTQLSTMGMGTE
RIEESLSMLFPEARLGRMDLDTTRNKYGYQRLLEEFGAGQIDILVGTQMITKGLDFGRVT
VVGIWDGDRILNFPDFRAGERAYQQITQVAGRAGRRATQGEVIIQTRNPDNDIFEKVIKG
DYYEFFRQEMMERKKFYYPPYVKLVKITTRHSDFKTTEKAANALHREMAQITVKKIVLGP
EKALIGRIKNQYQFESLIKLDRSGATQTSFKERLAEILEELQSRPEFRSVRWIVDVDPS
NT seq 2520 nt   +upstreamnt  +downstreamnt
gtgcaaagcctttttggagaagaagataatatgatgatggaatccgggaaaaatttcgcg
gatatcatacttcctgtgcccattccaaggatgttcacttataaaattccaaaaaatctg
gcttccgaaattcaaattggcgcccgggtaattgttcaatttggccgaaaaaagatccta
actggaatcattggtaaagttcataataagcctcctcaggcatacgatgccaagcctatt
ttggaagtactggatgatcaaccatccgtaaatccacttcaaatcagattttgggtttgg
ctggccagctattattgctgccatataggtgaagtcatgcatgcggctttgccttcaggc
ttgcgcctatcttcagagtcaaaggttcaggcaaacccaaattttgaccgggaaaatgct
gcctatcctatggatgaaagggaagataaaatcctggacgccttagaaaatcaggcagaa
ttgagctatgaagactgtgaaaaaattcttggcgtcaagaccatacatcccatattgaag
agtttggttgccaaagaggcagtattgatttttgaaaaagtacaggaaaaatacagccca
aaaattgaaaccagagtccggatcaaagcagaaatcgcatctgataaaaaagcattggaa
ggagtttttgagggattggcaggaaaagccaaacaggagtccattctgctaaaatacctt
agggatgtccctgttttcaaaaacatcaaactcaatgaaaagggagttgataaggctacc
ttgttggaagagggggattccgaaagctctttgaaaaccctgatcaaaaatggtgttttt
gaaagcttcaaagtggtagtcaaccgcatcgaagaaatggagcctgaaaaagaaccggcc
aaactttcggattcacaggagcaagcggtagcagaaatccaccaacattttgaggagaag
caatgcgtcttactccacgggattacaggaagcggtaaaactgaaatctacatcagacta
attcaggaagttttggaaagtggttcgcaggtacttatgctgcttcctgaaattgccctg
acaactcaaatagtcagcagattacagcaagtctttggttcgaagatgggagtctatcat
tccaaatattcagataatgaacgtgtggaagtttggaacggagttctttcaggccggttc
tcatttgtagtgggggttcgttcctccatttttctcccatttgattccctgggtttaatt
attgtcgatgaggagcatgaatccagtttcaagcaatttgatccagcacctagatttcag
gctagggattccgccattatgctggcttattttcatcaagccaaaacgctgttgggttct
gctactccatcttttgaatcttatttcaatgcacttcaggaaaaatacggctatgtgcag
ttgcatcagcgctatggagaagctcaactcccacaatatcatctcgccaatctgagtgca
gaccgtaaaaaaaatctcttgaagctggattcaacccgcttgatgagagaaaaaattcaa
gatgcactcagcaaaaatgaacaagtcctgattttccagaacagacgcggatactcgcca
tacattcagtgtgaagactgtggctggacgggtcaatgtgtgcaatgcgatgtcagccta
acctaccatcaatttgcggaagaattgcgctgtcattattgcggttataaggagaaggtt
cccagctcctgcccggcatgtgccagcacccaactttctaccatgggtatgggaacagag
cggatagaagaatccttaagtatgcttttcccggaagccaggttgggacggatggacttg
gatactacccgaaataaatatgggtatcagcgattattggaggaattcggagctggtcag
atcgatattttagtaggaacccagatgatcaccaaaggactggactttggaagagttacc
gtagtcgggatttgggatggggataggattttaaatttcccggatttcagagctggcgaa
agagcttatcagcaaattacgcaagttgcaggtcgcgcaggtagaagagctactcaggga
gaggtaatcattcaaaccagaaatcccgataatgatatttttgagaaggtaattaaggga
gattattatgagtttttccgtcaggaaatgatggaaaggaaaaagttttattatccccca
tatgttaagctggtcaagattaccaccaggcattctgattttaaaactaccgaaaaagcc
gccaatgcacttcatcgggaaatggcacagattacagtaaagaaaatcgttctaggccca
gaaaaagccctaattggcaggatcaaaaatcaatatcaatttgaaagtttgatcaagcta
gatcggtcaggcgctacccaaacaagcttcaaagaaaggctggctgaaatactggaagaa
ttacaatccaggccggaatttcgctcagtacgatggattgtcgatgtagatccatcttaa

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