Algoriphagus sp. NBT04N3: GYM62_11105
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Entry
GYM62_11105 CDS
T09623
Symbol
priA
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GYM62_11105 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_11105 (priA)
Enzymes [BR:
algo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYM62_11105 (priA)
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GYM62_11105 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
PriA_C
Zn_ribbon_PriA
Helicase_C
AAA_30
nSTAND3
AAA_22
AAA_19
NPHP3_N
AAA_16
TsaE
AAA_11
Sigma54_activat
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QYH39304
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All DBs
Position
2560357..2562876
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AA seq
839 aa
AA seq
DB search
MQSLFGEEDNMMMESGKNFADIILPVPIPRMFTYKIPKNLASEIQIGARVIVQFGRKKIL
TGIIGKVHNKPPQAYDAKPILEVLDDQPSVNPLQIRFWVWLASYYCCHIGEVMHAALPSG
LRLSSESKVQANPNFDRENAAYPMDEREDKILDALENQAELSYEDCEKILGVKTIHPILK
SLVAKEAVLIFEKVQEKYSPKIETRVRIKAEIASDKKALEGVFEGLAGKAKQESILLKYL
RDVPVFKNIKLNEKGVDKATLLEEGDSESSLKTLIKNGVFESFKVVVNRIEEMEPEKEPA
KLSDSQEQAVAEIHQHFEEKQCVLLHGITGSGKTEIYIRLIQEVLESGSQVLMLLPEIAL
TTQIVSRLQQVFGSKMGVYHSKYSDNERVEVWNGVLSGRFSFVVGVRSSIFLPFDSLGLI
IVDEEHESSFKQFDPAPRFQARDSAIMLAYFHQAKTLLGSATPSFESYFNALQEKYGYVQ
LHQRYGEAQLPQYHLANLSADRKKNLLKLDSTRLMREKIQDALSKNEQVLIFQNRRGYSP
YIQCEDCGWTGQCVQCDVSLTYHQFAEELRCHYCGYKEKVPSSCPACASTQLSTMGMGTE
RIEESLSMLFPEARLGRMDLDTTRNKYGYQRLLEEFGAGQIDILVGTQMITKGLDFGRVT
VVGIWDGDRILNFPDFRAGERAYQQITQVAGRAGRRATQGEVIIQTRNPDNDIFEKVIKG
DYYEFFRQEMMERKKFYYPPYVKLVKITTRHSDFKTTEKAANALHREMAQITVKKIVLGP
EKALIGRIKNQYQFESLIKLDRSGATQTSFKERLAEILEELQSRPEFRSVRWIVDVDPS
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaagcctttttggagaagaagataatatgatgatggaatccgggaaaaatttcgcg
gatatcatacttcctgtgcccattccaaggatgttcacttataaaattccaaaaaatctg
gcttccgaaattcaaattggcgcccgggtaattgttcaatttggccgaaaaaagatccta
actggaatcattggtaaagttcataataagcctcctcaggcatacgatgccaagcctatt
ttggaagtactggatgatcaaccatccgtaaatccacttcaaatcagattttgggtttgg
ctggccagctattattgctgccatataggtgaagtcatgcatgcggctttgccttcaggc
ttgcgcctatcttcagagtcaaaggttcaggcaaacccaaattttgaccgggaaaatgct
gcctatcctatggatgaaagggaagataaaatcctggacgccttagaaaatcaggcagaa
ttgagctatgaagactgtgaaaaaattcttggcgtcaagaccatacatcccatattgaag
agtttggttgccaaagaggcagtattgatttttgaaaaagtacaggaaaaatacagccca
aaaattgaaaccagagtccggatcaaagcagaaatcgcatctgataaaaaagcattggaa
ggagtttttgagggattggcaggaaaagccaaacaggagtccattctgctaaaatacctt
agggatgtccctgttttcaaaaacatcaaactcaatgaaaagggagttgataaggctacc
ttgttggaagagggggattccgaaagctctttgaaaaccctgatcaaaaatggtgttttt
gaaagcttcaaagtggtagtcaaccgcatcgaagaaatggagcctgaaaaagaaccggcc
aaactttcggattcacaggagcaagcggtagcagaaatccaccaacattttgaggagaag
caatgcgtcttactccacgggattacaggaagcggtaaaactgaaatctacatcagacta
attcaggaagttttggaaagtggttcgcaggtacttatgctgcttcctgaaattgccctg
acaactcaaatagtcagcagattacagcaagtctttggttcgaagatgggagtctatcat
tccaaatattcagataatgaacgtgtggaagtttggaacggagttctttcaggccggttc
tcatttgtagtgggggttcgttcctccatttttctcccatttgattccctgggtttaatt
attgtcgatgaggagcatgaatccagtttcaagcaatttgatccagcacctagatttcag
gctagggattccgccattatgctggcttattttcatcaagccaaaacgctgttgggttct
gctactccatcttttgaatcttatttcaatgcacttcaggaaaaatacggctatgtgcag
ttgcatcagcgctatggagaagctcaactcccacaatatcatctcgccaatctgagtgca
gaccgtaaaaaaaatctcttgaagctggattcaacccgcttgatgagagaaaaaattcaa
gatgcactcagcaaaaatgaacaagtcctgattttccagaacagacgcggatactcgcca
tacattcagtgtgaagactgtggctggacgggtcaatgtgtgcaatgcgatgtcagccta
acctaccatcaatttgcggaagaattgcgctgtcattattgcggttataaggagaaggtt
cccagctcctgcccggcatgtgccagcacccaactttctaccatgggtatgggaacagag
cggatagaagaatccttaagtatgcttttcccggaagccaggttgggacggatggacttg
gatactacccgaaataaatatgggtatcagcgattattggaggaattcggagctggtcag
atcgatattttagtaggaacccagatgatcaccaaaggactggactttggaagagttacc
gtagtcgggatttgggatggggataggattttaaatttcccggatttcagagctggcgaa
agagcttatcagcaaattacgcaagttgcaggtcgcgcaggtagaagagctactcaggga
gaggtaatcattcaaaccagaaatcccgataatgatatttttgagaaggtaattaaggga
gattattatgagtttttccgtcaggaaatgatggaaaggaaaaagttttattatccccca
tatgttaagctggtcaagattaccaccaggcattctgattttaaaactaccgaaaaagcc
gccaatgcacttcatcgggaaatggcacagattacagtaaagaaaatcgttctaggccca
gaaaaagccctaattggcaggatcaaaaatcaatatcaatttgaaagtttgatcaagcta
gatcggtcaggcgctacccaaacaagcttcaaagaaaggctggctgaaatactggaagaa
ttacaatccaggccggaatttcgctcagtacgatggattgtcgatgtagatccatcttaa
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